Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1896495..1896640 | Replicon | chromosome |
| Accession | NZ_CP115837 | ||
| Organism | Klebsiella pneumoniae strain MRSN22265 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1896531..1896633 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1896495..1896640 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFB76_RS09235 (KFB76_009235) | 1891625..1893685 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| KFB76_RS09240 (KFB76_009240) | 1893689..1894348 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KFB76_RS09245 (KFB76_009245) | 1894427..1894657 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KFB76_RS09250 (KFB76_009250) | 1894770..1895144 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| KFB76_RS09255 (KFB76_009255) | 1895148..1896017 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| KFB76_RS09260 (KFB76_009260) | 1896034..1896372 | + | 339 | WP_002911404.1 | YebY family protein | - |
| KFB76_RS09265 (KFB76_009265) | 1897008..1897151 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| KFB76_RS09270 (KFB76_009270) | 1897256..1898224 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| KFB76_RS09275 (KFB76_009275) | 1898381..1899034 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| KFB76_RS09280 (KFB76_009280) | 1899031..1899222 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KFB76_RS09285 (KFB76_009285) | 1899320..1899559 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KFB76_RS09290 (KFB76_009290) | 1899675..1901108 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T267422 NZ_CP115837:1896531-1896633 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT267422 NZ_CP115837:c1896640-1896495 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
