Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2014963..2015108 | Replicon | chromosome |
| Accession | NZ_CP115831 | ||
| Organism | Klebsiella pneumoniae strain L4-FAA5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2014999..2015101 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2014963..2015108 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PGO70_RS09525 | 2010093..2012153 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| PGO70_RS09530 | 2012157..2012816 | - | 660 | WP_032446227.1 | exodeoxyribonuclease X | - |
| PGO70_RS09535 | 2012895..2013125 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| PGO70_RS09540 | 2013238..2013612 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| PGO70_RS09545 | 2013616..2014485 | + | 870 | WP_032446226.1 | copper homeostasis membrane protein CopD | - |
| PGO70_RS09550 | 2014502..2014840 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2014963..2015108 | - | 146 | - | - | Antitoxin |
| - | 2014999..2015101 | + | 103 | - | - | Toxin |
| PGO70_RS09555 | 2015476..2015619 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| PGO70_RS09560 | 2015724..2016692 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| PGO70_RS09565 | 2016849..2017502 | + | 654 | WP_032446225.1 | protein-serine/threonine phosphatase | - |
| PGO70_RS09570 | 2017499..2017690 | - | 192 | WP_002911395.1 | YebW family protein | - |
| PGO70_RS09575 | 2017788..2018027 | - | 240 | WP_002911393.1 | YebV family protein | - |
| PGO70_RS09580 | 2018143..2019576 | - | 1434 | WP_032446224.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T267401 NZ_CP115831:2014999-2015101 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT267401 NZ_CP115831:c2015108-2014963 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
