Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/ParE-RHH
Location 823050..823590 Replicon chromosome
Accession NZ_CP115819
Organism Cellulophaga omnivescoria strain MSK1

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag PBN93_RS03575 Protein ID WP_271081892.1
Coordinates 823309..823590 (+) Length 94 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag PBN93_RS03570 Protein ID WP_271081446.1
Coordinates 823050..823292 (+) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PBN93_RS03550 (PBN93_03550) 818364..819881 - 1518 WP_271081443.1 choice-of-anchor I family protein -
PBN93_RS03555 (PBN93_03555) 819966..820850 - 885 WP_271081444.1 GTPase Era -
PBN93_RS03560 (PBN93_03560) 820901..822379 - 1479 WP_271081445.1 SLC13 family permease -
PBN93_RS03570 (PBN93_03570) 823050..823292 + 243 WP_271081446.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
PBN93_RS03575 (PBN93_03575) 823309..823590 + 282 WP_271081892.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
PBN93_RS03580 (PBN93_03580) 823869..824411 + 543 WP_271081447.1 hypothetical protein -
PBN93_RS03585 (PBN93_03585) 824602..825054 + 453 WP_100894966.1 hypothetical protein -
PBN93_RS03590 (PBN93_03590) 825232..825471 + 240 WP_271081448.1 CopG family transcriptional regulator -
PBN93_RS03595 (PBN93_03595) 825464..825709 + 246 WP_271081449.1 type II toxin-antitoxin system RelE/ParE family toxin -
PBN93_RS03600 (PBN93_03600) 825978..827042 + 1065 WP_271081450.1 ArsO family NAD(P)H-dependent flavin-containing monooxygenase -
PBN93_RS03605 (PBN93_03605) 827231..828484 + 1254 WP_271081451.1 PQQ-binding-like beta-propeller repeat protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(2-87)

Antitoxin

Antitoxin ParD

(4-67)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 11311.21 Da        Isoelectric Point: 10.1438

>T267389 WP_271081892.1 NZ_CP115819:823309-823590 [Cellulophaga omnivescoria]
ISKQSIKDLDKIWIYTLNKWFKEQADRYYDLIITEIEFIADNFMTGKSAEQTRKNYRVTKIKSHLIFYRKVENDIVEIVR
VLHQRMDIKKGLK

Download         Length: 282 bp

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 9293.45 Da        Isoelectric Point: 6.8825

>AT267389 WP_271081446.1 NZ_CP115819:823050-823292 [Cellulophaga omnivescoria]
MGKNTSISLGNHFENFIKEEVNSGRYGSVSEVIRSALRLLEREEKKERELIKALEVGENSGFDENFDPKQHLKELHRKHL

Download         Length: 243 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References