Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-RHH
Location 2618774..2619330 Replicon chromosome
Accession NZ_CP115775
Organism Paracoccus albus strain SCSIO 80058

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag PAF20_RS13220 Protein ID WP_101754684.1
Coordinates 2619022..2619330 (+) Length 103 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag PAF20_RS13215 Protein ID WP_232816719.1
Coordinates 2618774..2619025 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PAF20_RS13195 (PAF20_13195) 2614709..2615902 + 1194 WP_252734076.1 acyl-CoA dehydrogenase -
PAF20_RS13200 (PAF20_13200) 2615966..2616925 - 960 WP_271071052.1 IS110 family transposase -
PAF20_RS13205 (PAF20_13205) 2617712..2618332 - 621 WP_101754687.1 SOS response-associated peptidase -
PAF20_RS13210 (PAF20_13210) 2618337..2618654 - 318 WP_271071072.1 hypothetical protein -
PAF20_RS13215 (PAF20_13215) 2618774..2619025 + 252 WP_232816719.1 hypothetical protein Antitoxin
PAF20_RS13220 (PAF20_13220) 2619022..2619330 + 309 WP_101754684.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
PAF20_RS13225 (PAF20_13225) 2619552..2620892 + 1341 WP_101754683.1 hypothetical protein -
PAF20_RS13230 (PAF20_13230) 2621324..2622343 - 1020 WP_271071073.1 SMP-30/gluconolactonase/LRE family protein -
PAF20_RS13235 (PAF20_13235) 2622354..2623148 - 795 WP_271071074.1 glucose 1-dehydrogenase -
PAF20_RS13240 (PAF20_13240) 2623254..2624150 + 897 WP_271071075.1 LysR family transcriptional regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-90)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 103 a.a.        Molecular weight: 11144.79 Da        Isoelectric Point: 7.0119

>T267376 WP_101754684.1 NZ_CP115775:2619022-2619330 [Paracoccus albus]
MKTLLIAEPAGRDLEAIVDYIARENPAAAENVYRQIARTAAKLPEFPALGRPGRFSGTREMNVAGSPYLIVYEVNVEAVT
ILAVFHTSRNLAAALRDRMEGS

Download         Length: 309 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9006.05 Da        Isoelectric Point: 4.6855

>AT267376 WP_232816719.1 NZ_CP115775:2618774-2619025 [Paracoccus albus]
MPQRAETEPMTVRTARVSEIDALAAAMDRSRNYVVNQAIDQFLEANAWQMERIAAGVAAAREGNVSSADDVFGAIATKHG
WQA

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References