Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VagC
Location 2206843..2207513 Replicon chromosome
Accession NZ_CP115713
Organism Rhodopseudomonas palustris strain k7

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag OOZ54_RS10165 Protein ID WP_271102506.1
Coordinates 2206843..2207253 (-) Length 137 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag OOZ54_RS10170 Protein ID WP_271102507.1
Coordinates 2207250..2207513 (-) Length 88 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OOZ54_RS10150 (OOZ54_10150) 2203214..2203351 - 138 WP_271102503.1 hypothetical protein -
OOZ54_RS10155 (OOZ54_10155) 2203719..2205509 + 1791 WP_271102504.1 sulfatase-like hydrolase/transferase -
OOZ54_RS10160 (OOZ54_10160) 2205545..2206588 + 1044 WP_271102505.1 transporter -
OOZ54_RS10165 (OOZ54_10165) 2206843..2207253 - 411 WP_271102506.1 type II toxin-antitoxin system VapC family toxin Toxin
OOZ54_RS10170 (OOZ54_10170) 2207250..2207513 - 264 WP_271102507.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Antitoxin
OOZ54_RS10175 (OOZ54_10175) 2207694..2208119 + 426 WP_012495520.1 cupin domain-containing protein -
OOZ54_RS10180 (OOZ54_10180) 2208216..2209385 - 1170 WP_011157550.1 DUF2865 domain-containing protein -
OOZ54_RS10185 (OOZ54_10185) 2209571..2209879 - 309 WP_011157551.1 hypothetical protein -
OOZ54_RS10190 (OOZ54_10190) 2210260..2211909 + 1650 WP_271102508.1 cysteine--tRNA ligase -
OOZ54_RS10195 (OOZ54_10195) 2212235..2212366 + 132 WP_271102509.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(5-124)

Antitoxin

SpoVT-AbrB domain

(9-58)


Sequences

Toxin        


Download         Length: 137 a.a.        Molecular weight: 15078.44 Da        Isoelectric Point: 6.2327

>T267336 WP_271102506.1 NZ_CP115713:c2207253-2206843 [Rhodopseudomonas palustris]
MSGWMLDTNVASHVIRGDRREIIERLVALPISDVVISSITEGELLYGLAKRGYPTALSERVREFLLRVDVLPWDHEVTKT
YADLRAVCEAKGVTLSPLDMMIAAHAAATNATLVTRDKAFSRVPSPLRIADWAEMS

Download         Length: 411 bp

Antitoxin


Download         Length: 88 a.a.        Molecular weight: 9830.88 Da        Isoelectric Point: 5.0900

>AT267336 WP_271102507.1 NZ_CP115713:c2207513-2207250 [Rhodopseudomonas palustris]
VTSRTAKIFTTGRSQAVRLPAEFRFEGSEVFVRRDPRTGDVILSRKPDSWDGLLQLHQSADVPGDFLGPSDRSQLPQDRD
PFEGWTE

Download         Length: 264 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References