Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PumA-relB/upstrm_HI1419-dnstrm_HI1420
Location 1750420..1751036 Replicon chromosome
Accession NZ_CP115713
Organism Rhodopseudomonas palustris strain k7

Toxin (Protein)


Gene name PumA Uniprot ID -
Locus tag OOZ54_RS08115 Protein ID WP_271102257.1
Coordinates 1750740..1751036 (-) Length 99 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag OOZ54_RS08110 Protein ID WP_271102256.1
Coordinates 1750420..1750737 (-) Length 106 a.a.

Genomic Context

OOZ54_RS08090OOZ54_RS08095OOZ54_RS08105OOZ54_RS08120OOZ54_RS08125OOZ54_RS08085OOZ54_RS08100OOZ54_RS08110OOZ54_RS08115
Location: 1746589..1748133 (1545 bp)
Type: Others
Protein ID: WP_011157177.1
Location: 1748246..1748677 (432 bp)
Type: Others
Protein ID: WP_012495214.1
Location: 1749776..1749970 (195 bp)
Type: Others
Protein ID: WP_271102255.1
Location: 1751658..1752869 (1212 bp)
Type: Others
Protein ID: WP_271102258.1
Location: 1753733..1754467 (735 bp)
Type: Others
Protein ID: WP_271102259.1
Location: 1745827..1746408 (582 bp)
Type: Others
Protein ID: WP_271102253.1
Location: 1748841..1749161 (321 bp)
Type: Others
Protein ID: WP_271102254.1
Location: 1750420..1750737 (318 bp)
Type: Antitoxin
Protein ID: WP_271102256.1
Location: 1750740..1751036 (297 bp)
Type: Toxin
Protein ID: WP_271102257.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
OOZ54_RS08085 (OOZ54_08085)1745827..1746408-582WP_271102253.1L,D-transpeptidase-
OOZ54_RS08090 (OOZ54_08090)1746589..1748133+1545WP_011157177.1acetolactate synthase large subunit-
OOZ54_RS08095 (OOZ54_08095)1748246..1748677+432WP_012495214.1DUF5413 family protein-
OOZ54_RS08100 (OOZ54_08100)1748841..1749161-321WP_271102254.1hypothetical protein-
OOZ54_RS08105 (OOZ54_08105)1749776..1749970+195WP_271102255.1hypothetical protein-
OOZ54_RS08110 (OOZ54_08110)1750420..1750737-318WP_271102256.1putative addiction module antidote proteinAntitoxin
OOZ54_RS08115 (OOZ54_08115)1750740..1751036-297WP_271102257.1type II toxin-antitoxin system RelE/ParE family toxinToxin
OOZ54_RS08120 (OOZ54_08120)1751658..1752869+1212WP_271102258.1tyrosine-type recombinase/integrase-
OOZ54_RS08125 (OOZ54_08125)1753733..1754467+735WP_271102259.1hypothetical protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideProphage--1744934..175985514921


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-like

(13-94)

Antitoxin

Uncharacterized protein HI1420

(8-96)


Sequences

Toxin        


Download         Length: 99 a.a.        Molecular weight: 11033.65 Da        Isoelectric Point: 9.4997

>T267335 WP_271102257.1 NZ_CP115713:c1751036-1750740 [Rhodopseudomonas palustris]
MIDVRETMDFTNWLAALSDLRARLQIVRRIDRIAAGNFGDAKSVGGAVKELRIDYGPGYRVYYTRRGDTVVILLCGGDKR
TQSKDIRKAKEIAEALED

Download         Length: 297 bp

Antitoxin


Download         Length: 106 a.a.        Molecular weight: 11370.21 Da        Isoelectric Point: 10.7447

>AT267335 WP_271102256.1 NZ_CP115713:c1750737-1750420 [Rhodopseudomonas palustris]
MKVSKLKKFNAAEHLRTPEARAEYLNIVLADGDPNEVRDALSLVARAQGMSAIAKAAGVTREGLYKTLGENGNPEFATIL
RVFGAMGFRLTAELAKTKPRRKAVA

Download         Length: 318 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References