Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PumA-relB/upstrm_HI1419-dnstrm_HI1420
Location 1750420..1751036 Replicon chromosome
Accession NZ_CP115713
Organism Rhodopseudomonas palustris strain k7

Toxin (Protein)


Gene name PumA Uniprot ID -
Locus tag OOZ54_RS08115 Protein ID WP_271102257.1
Coordinates 1750740..1751036 (-) Length 99 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag OOZ54_RS08110 Protein ID WP_271102256.1
Coordinates 1750420..1750737 (-) Length 106 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OOZ54_RS08085 (OOZ54_08085) 1745827..1746408 - 582 WP_271102253.1 L,D-transpeptidase -
OOZ54_RS08090 (OOZ54_08090) 1746589..1748133 + 1545 WP_011157177.1 acetolactate synthase large subunit -
OOZ54_RS08095 (OOZ54_08095) 1748246..1748677 + 432 WP_012495214.1 DUF5413 family protein -
OOZ54_RS08100 (OOZ54_08100) 1748841..1749161 - 321 WP_271102254.1 hypothetical protein -
OOZ54_RS08105 (OOZ54_08105) 1749776..1749970 + 195 WP_271102255.1 hypothetical protein -
OOZ54_RS08110 (OOZ54_08110) 1750420..1750737 - 318 WP_271102256.1 putative addiction module antidote protein Antitoxin
OOZ54_RS08115 (OOZ54_08115) 1750740..1751036 - 297 WP_271102257.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
OOZ54_RS08120 (OOZ54_08120) 1751658..1752869 + 1212 WP_271102258.1 tyrosine-type recombinase/integrase -
OOZ54_RS08125 (OOZ54_08125) 1753733..1754467 + 735 WP_271102259.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 1744934..1759855 14921


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-like

(13-94)

Antitoxin

Uncharacterized protein HI1420

(8-96)


Sequences

Toxin        


Download         Length: 99 a.a.        Molecular weight: 11033.65 Da        Isoelectric Point: 9.4997

>T267335 WP_271102257.1 NZ_CP115713:c1751036-1750740 [Rhodopseudomonas palustris]
MIDVRETMDFTNWLAALSDLRARLQIVRRIDRIAAGNFGDAKSVGGAVKELRIDYGPGYRVYYTRRGDTVVILLCGGDKR
TQSKDIRKAKEIAEALED

Download         Length: 297 bp

Antitoxin


Download         Length: 106 a.a.        Molecular weight: 11370.21 Da        Isoelectric Point: 10.7447

>AT267335 WP_271102256.1 NZ_CP115713:c1750737-1750420 [Rhodopseudomonas palustris]
MKVSKLKKFNAAEHLRTPEARAEYLNIVLADGDPNEVRDALSLVARAQGMSAIAKAAGVTREGLYKTLGENGNPEFATIL
RVFGAMGFRLTAELAKTKPRRKAVA

Download         Length: 318 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References