Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2046606..2046772 | Replicon | chromosome |
| Accession | NZ_CP115712 | ||
| Organism | Kosakonia pseudosacchari strain RX.G5M8 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2046666..2046768 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2046606..2046772 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PF050_RS09745 (PF050_09745) | 2041805..2043880 | + | 2076 | WP_097399571.1 | oligopeptidase B | - |
| PF050_RS09750 (PF050_09750) | 2043862..2044524 | - | 663 | WP_086874075.1 | exodeoxyribonuclease X | - |
| PF050_RS09755 (PF050_09755) | 2044536..2044766 | - | 231 | WP_086874076.1 | DNA polymerase III subunit theta | - |
| PF050_RS09760 (PF050_09760) | 2044904..2045278 | + | 375 | WP_271069891.1 | CopC domain-containing protein YobA | - |
| PF050_RS09765 (PF050_09765) | 2045282..2046151 | + | 870 | WP_271069892.1 | copper homeostasis membrane protein CopD | - |
| PF050_RS09770 (PF050_09770) | 2046170..2046508 | + | 339 | WP_271069893.1 | YebY family protein | - |
| - | 2046606..2046772 | - | 167 | - | - | Antitoxin |
| - | 2046666..2046768 | + | 103 | - | - | Toxin |
| PF050_RS09775 (PF050_09775) | 2048102..2049049 | - | 948 | WP_271069894.1 | VirK/YbjX family protein | - |
| PF050_RS09780 (PF050_09780) | 2049225..2049869 | + | 645 | WP_271070130.1 | protein-serine/threonine phosphatase | - |
| PF050_RS09785 (PF050_09785) | 2049870..2050061 | - | 192 | WP_086874081.1 | YebW family protein | - |
| PF050_RS09790 (PF050_09790) | 2050167..2050406 | - | 240 | WP_017456958.1 | YebV family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T267327 NZ_CP115712:2046666-2046768 [Kosakonia pseudosacchari]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTTTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 167 bp
>AT267327 NZ_CP115712:c2046772-2046606 [Kosakonia pseudosacchari]
AGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGGCGTCAGGTTTTCCAGTCCGCGACAAAAGTGGTC
AGAAAAA
AGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGGCGTCAGGTTTTCCAGTCCGCGACAAAAGTGGTC
AGAAAAA
