Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 873555..874212 Replicon chromosome
Accession NZ_CP115701
Organism Klebsiella pneumoniae strain 2020CK-00201

Toxin (Protein)


Gene name cptA Uniprot ID W8UCT0
Locus tag PF326_RS04410 Protein ID WP_002916310.1
Coordinates 873802..874212 (+) Length 137 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID W8UQ37
Locus tag PF326_RS04405 Protein ID WP_002916312.1
Coordinates 873555..873821 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PF326_RS04380 (PF326_04380) 868711..870144 - 1434 WP_002916322.1 6-phospho-beta-glucosidase BglA -
PF326_RS04385 (PF326_04385) 870263..870991 - 729 WP_002916321.1 MurR/RpiR family transcriptional regulator -
PF326_RS04390 (PF326_04390) 871041..871352 + 312 WP_002916319.1 N(4)-acetylcytidine aminohydrolase -
PF326_RS04395 (PF326_04395) 871516..872175 + 660 WP_002916317.1 hemolysin III family protein -
PF326_RS04400 (PF326_04400) 872326..873309 - 984 WP_002916313.1 tRNA-modifying protein YgfZ -
PF326_RS04405 (PF326_04405) 873555..873821 + 267 WP_002916312.1 FAD assembly factor SdhE Antitoxin
PF326_RS04410 (PF326_04410) 873802..874212 + 411 WP_002916310.1 protein YgfX Toxin
PF326_RS04415 (PF326_04415) 874219..874740 - 522 WP_002916308.1 flavodoxin FldB -
PF326_RS04420 (PF326_04420) 874841..875737 + 897 WP_004144729.1 site-specific tyrosine recombinase XerD -
PF326_RS04425 (PF326_04425) 875760..876473 + 714 WP_002916301.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
PF326_RS04430 (PF326_04430) 876479..878212 + 1734 WP_004151783.1 single-stranded-DNA-specific exonuclease RecJ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-132)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 137 a.a.        Molecular weight: 16049.85 Da        Isoelectric Point: 11.4778

>T267292 WP_002916310.1 NZ_CP115701:873802-874212 [Klebsiella pneumoniae]
VVLWQSDLRISWRAQWFSLLLHGVVAALVLLVPWPLSYTPIWLLLLSLVVFDCVRSQRRIHARRGEIKLLTDSRLRWQNA
EWEILGTPWVINSGMLLRLRHVDTRRGQHLWLAADSMDAGEWRDLRRLVLQKPAQE

Download         Length: 411 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10480.98 Da        Isoelectric Point: 5.1116

>AT267292 WP_002916312.1 NZ_CP115701:873555-873821 [Klebsiella pneumoniae]
MDINNKARIHWACRRGMRELDISIMPFFEYEYDTLSDADKQLFIRLLENDDPDLFNWLMNHGKPADAELQRMVTLIQTRN
RERGPVAI

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H3GSW7

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GY41

References