Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2726845..2727046 | Replicon | chromosome |
| Accession | NZ_CP115696 | ||
| Organism | Enterobacter hormaechei strain 2020CK-00202 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2726850..2726953 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2726845..2727046 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PF328_RS12935 (PF328_12935) | 2722061..2722321 | - | 261 | WP_039270557.1 | hypothetical protein | - |
| PF328_RS12940 (PF328_12940) | 2722305..2722589 | - | 285 | WP_039270555.1 | phage holin family protein | - |
| PF328_RS12945 (PF328_12945) | 2722729..2722926 | - | 198 | WP_127850788.1 | hypothetical protein | - |
| PF328_RS12950 (PF328_12950) | 2722956..2723390 | - | 435 | WP_039270553.1 | hypothetical protein | - |
| PF328_RS12960 (PF328_12960) | 2724836..2725351 | - | 516 | WP_039270551.1 | hypothetical protein | - |
| PF328_RS12965 (PF328_12965) | 2725584..2725997 | - | 414 | WP_052685510.1 | bacteriophage antitermination protein Q | - |
| PF328_RS12970 (PF328_12970) | 2726387..2726761 | + | 375 | Protein_2533 | tyrosine-type recombinase/integrase | - |
| - | 2726845..2727046 | + | 202 | - | - | Antitoxin |
| - | 2726850..2726953 | - | 104 | - | - | Toxin |
| PF328_RS12975 (PF328_12975) | 2727095..2727433 | - | 339 | WP_003859787.1 | YebY family protein | - |
| PF328_RS12980 (PF328_12980) | 2727450..2728319 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| PF328_RS12985 (PF328_12985) | 2728321..2728692 | - | 372 | WP_023296802.1 | CopC domain-containing protein YobA | - |
| PF328_RS12990 (PF328_12990) | 2728830..2729060 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| PF328_RS12995 (PF328_12995) | 2729172..2729822 | + | 651 | WP_015570289.1 | carbon-nitrogen hydrolase family protein | - |
| PF328_RS13000 (PF328_13000) | 2729847..2730509 | + | 663 | WP_039270549.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2710629..2747791 | 37162 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T267281 NZ_CP115696:c2726953-2726850 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT267281 NZ_CP115696:2726845-2727046 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
