Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2872065..2872274 | Replicon | chromosome |
| Accession | NZ_CP115689 | ||
| Organism | Enterobacter hormaechei strain 2020CK-00204 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2872078..2872181 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2872065..2872274 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PF325_RS14065 (PF325_14065) | 2868333..2869781 | + | 1449 | WP_195758489.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PF325_RS14070 (PF325_14070) | 2869888..2870127 | + | 240 | WP_003859885.1 | YebV family protein | - |
| PF325_RS14075 (PF325_14075) | 2870162..2870806 | - | 645 | WP_015570293.1 | protein-serine/threonine phosphatase | - |
| PF325_RS14080 (PF325_14080) | 2870974..2871954 | + | 981 | WP_023296801.1 | VirK/YbjX family protein | - |
| PF325_RS14085 (PF325_14085) | 2872000..2872197 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2872065..2872274 | + | 210 | - | - | Antitoxin |
| - | 2872078..2872181 | - | 104 | - | - | Toxin |
| PF325_RS14090 (PF325_14090) | 2872324..2872662 | - | 339 | WP_003859787.1 | YebY family protein | - |
| PF325_RS14095 (PF325_14095) | 2872679..2873548 | - | 870 | WP_271040312.1 | copper homeostasis membrane protein CopD | - |
| PF325_RS14100 (PF325_14100) | 2873550..2873921 | - | 372 | WP_023296802.1 | CopC domain-containing protein YobA | - |
| PF325_RS14105 (PF325_14105) | 2874059..2874289 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| PF325_RS14110 (PF325_14110) | 2874401..2875051 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| PF325_RS14115 (PF325_14115) | 2875075..2875737 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T267270 NZ_CP115689:c2872181-2872078 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT267270 NZ_CP115689:2872065-2872274 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
