Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2726849..2727050 | Replicon | chromosome |
| Accession | NZ_CP115672 | ||
| Organism | Enterobacter hormaechei strain 2020CK-00203 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2726854..2726957 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2726849..2727050 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PF324_RS12935 (PF324_12935) | 2722065..2722325 | - | 261 | WP_039270557.1 | hypothetical protein | - |
| PF324_RS12940 (PF324_12940) | 2722309..2722593 | - | 285 | WP_039270555.1 | phage holin family protein | - |
| PF324_RS12945 (PF324_12945) | 2722733..2722930 | - | 198 | WP_127850788.1 | hypothetical protein | - |
| PF324_RS12950 (PF324_12950) | 2722960..2723394 | - | 435 | WP_039270553.1 | hypothetical protein | - |
| PF324_RS12960 (PF324_12960) | 2724840..2725355 | - | 516 | WP_039270551.1 | hypothetical protein | - |
| PF324_RS12965 (PF324_12965) | 2725588..2726001 | - | 414 | WP_052685510.1 | bacteriophage antitermination protein Q | - |
| PF324_RS12970 (PF324_12970) | 2726391..2726765 | + | 375 | Protein_2533 | tyrosine-type recombinase/integrase | - |
| - | 2726849..2727050 | + | 202 | - | - | Antitoxin |
| - | 2726854..2726957 | - | 104 | - | - | Toxin |
| PF324_RS12975 (PF324_12975) | 2727099..2727437 | - | 339 | WP_003859787.1 | YebY family protein | - |
| PF324_RS12980 (PF324_12980) | 2727454..2728323 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| PF324_RS12985 (PF324_12985) | 2728325..2728696 | - | 372 | WP_023296802.1 | CopC domain-containing protein YobA | - |
| PF324_RS12990 (PF324_12990) | 2728834..2729064 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| PF324_RS12995 (PF324_12995) | 2729176..2729826 | + | 651 | WP_015570289.1 | carbon-nitrogen hydrolase family protein | - |
| PF324_RS13000 (PF324_13000) | 2729851..2730513 | + | 663 | WP_039270549.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2710633..2747795 | 37162 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T267255 NZ_CP115672:c2726957-2726854 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT267255 NZ_CP115672:2726849-2727050 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
