Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE(toxin)
Location 4940282..4940831 Replicon chromosome
Accession NZ_CP115669
Organism Pseudomonas sp. PSE14

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag O6P39_RS22680 Protein ID WP_275608654.1
Coordinates 4940282..4940593 (-) Length 104 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag O6P39_RS22685 Protein ID WP_275608655.1
Coordinates 4940583..4940831 (-) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
O6P39_RS22650 (O6P39_22650) 4935597..4935815 - 219 WP_275608649.1 hypothetical protein -
O6P39_RS22655 (O6P39_22655) 4935808..4936080 - 273 WP_045217776.1 hypothetical protein -
O6P39_RS22660 (O6P39_22660) 4936723..4937055 + 333 WP_275608650.1 hypothetical protein -
O6P39_RS22665 (O6P39_22665) 4937099..4937968 - 870 WP_275608651.1 SIR2 family protein -
O6P39_RS22670 (O6P39_22670) 4937965..4938960 - 996 WP_275608652.1 ParA family protein -
O6P39_RS22675 (O6P39_22675) 4939105..4939962 - 858 WP_275608653.1 restriction endonuclease -
O6P39_RS22680 (O6P39_22680) 4940282..4940593 - 312 WP_275608654.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
O6P39_RS22685 (O6P39_22685) 4940583..4940831 - 249 WP_275608655.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
O6P39_RS22690 (O6P39_22690) 4941011..4941133 - 123 WP_275608656.1 hypothetical protein -
O6P39_RS22695 (O6P39_22695) 4941407..4941763 - 357 WP_275612012.1 SOS response-associated peptidase family protein -
O6P39_RS22700 (O6P39_22700) 4942147..4943145 - 999 WP_275608657.1 isocitrate/isopropylmalate dehydrogenase family protein -
O6P39_RS22705 (O6P39_22705) 4943223..4943867 - 645 WP_275608658.1 carbonate dehydratase -
O6P39_RS22710 (O6P39_22710) 4943931..4945175 - 1245 WP_275608659.1 C69 family dipeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(13-90)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 104 a.a.        Molecular weight: 11889.86 Da        Isoelectric Point: 10.4632

>T267248 WP_275608654.1 NZ_CP115669:c4940593-4940282 [Pseudomonas sp. PSE14]
MNSEPANGPSQYKLRIKDSAEREWRKLPEPIRAAFKKKLAERLANPRVEKDKLTGMKDCYKIKLKDVGYRLVYRVDDGEL
IIEVIAAGKRERGEAYAAARKRL

Download         Length: 312 bp

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9018.29 Da        Isoelectric Point: 4.6263

>AT267248 WP_275608655.1 NZ_CP115669:c4940831-4940583 [Pseudomonas sp. PSE14]
MAHSVLADVAASITELKKDPMGTIEAGRGKTVVILNRNAPAFYAVPPDVYERMLEALDDAHLARLVKERSDEPSREISLD
EL

Download         Length: 249 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References