Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | PP_4151-4152/excise(antitoxin) |
Location | 4502728..4503767 | Replicon | chromosome |
Accession | NZ_CP115663 | ||
Organism | Pseudomonas putida strain PD584_L3 |
Toxin (Protein)
Gene name | PP_4152 | Uniprot ID | Q88FE5 |
Locus tag | PED35_RS20505 | Protein ID | WP_010954922.1 |
Coordinates | 4503192..4503767 (+) | Length | 192 a.a. |
Antitoxin (Protein)
Gene name | PP_4151 | Uniprot ID | A0A2V4F8J0 |
Locus tag | PED35_RS20500 | Protein ID | WP_049588231.1 |
Coordinates | 4502728..4503195 (+) | Length | 156 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
PED35_RS20485 (PED35_20485) | 4498880..4499953 | + | 1074 | WP_010954918.1 | microcin C ABC transporter permease YejB | - |
PED35_RS20490 (PED35_20490) | 4499955..4500974 | + | 1020 | WP_010954919.1 | ABC transporter permease | - |
PED35_RS20495 (PED35_20495) | 4500976..4502580 | + | 1605 | WP_010954920.1 | ABC transporter ATP-binding protein | - |
PED35_RS20500 (PED35_20500) | 4502728..4503195 | + | 468 | WP_049588231.1 | helix-turn-helix domain-containing protein | Antitoxin |
PED35_RS20505 (PED35_20505) | 4503192..4503767 | + | 576 | WP_010954922.1 | PIN domain-containing protein | Toxin |
PED35_RS20510 (PED35_20510) | 4503981..4506911 | + | 2931 | WP_049588229.1 | aminotransferase | - |
PED35_RS20515 (PED35_20515) | 4506915..4508138 | - | 1224 | WP_010954925.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 192 a.a. Molecular weight: 21646.86 Da Isoelectric Point: 5.5710
>T267232 WP_010954922.1 NZ_CP115663:4503192-4503767 [Pseudomonas putida]
MKHSPFTAIYDANVLYPAPLRDFLMNLALTGIYRARWSASIHDEWKRNLLLNRPDLTPEHLDRTSSLMDAAVPDALVTDY
DSLVEGLDLPDRDDRHVLAAAIKCNASVIVTFNLKDFSKAVLGAFDIEPLHPDDFIADLWDLDKAAVLEAAQRQRISLKN
PPHSVQQYLDRLLQQKLPETVKLLSAFKFLL
MKHSPFTAIYDANVLYPAPLRDFLMNLALTGIYRARWSASIHDEWKRNLLLNRPDLTPEHLDRTSSLMDAAVPDALVTDY
DSLVEGLDLPDRDDRHVLAAAIKCNASVIVTFNLKDFSKAVLGAFDIEPLHPDDFIADLWDLDKAAVLEAAQRQRISLKN
PPHSVQQYLDRLLQQKLPETVKLLSAFKFLL
Download Length: 576 bp
Antitoxin
Download Length: 156 a.a. Molecular weight: 17112.54 Da Isoelectric Point: 6.3403
>AT267232 WP_049588231.1 NZ_CP115663:4502728-4503195 [Pseudomonas putida]
MTTANLSSHVLPDEKEIAVAVESSRTLAAFLSTKSDTQRIELLNEENQRQVVEVPTFALRLFGEILSELALGNSVKVVPI
HAELTTQEAADLLNVSRPHLVKLLDEAVIPHTKTGRHRRVKFSDLVAYKDKRDGVSRAAIDALAAQAQELKMGYE
MTTANLSSHVLPDEKEIAVAVESSRTLAAFLSTKSDTQRIELLNEENQRQVVEVPTFALRLFGEILSELALGNSVKVVPI
HAELTTQEAADLLNVSRPHLVKLLDEAVIPHTKTGRHRRVKFSDLVAYKDKRDGVSRAAIDALAAQAQELKMGYE
Download Length: 468 bp
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | Q88FE5 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A2V4F8J0 |