Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2129821..2129983 | Replicon | chromosome |
| Accession | NZ_CP115659 | ||
| Organism | Kosakonia oryzendophytica strain FY-07 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2129881..2129983 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2129821..2129983 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O9K67_RS10410 (O9K67_10410) | 2125022..2127097 | + | 2076 | WP_061496664.1 | oligopeptidase B | - |
| O9K67_RS10415 (O9K67_10415) | 2127079..2127741 | - | 663 | WP_061496662.1 | exodeoxyribonuclease X | - |
| O9K67_RS10420 (O9K67_10420) | 2127753..2127983 | - | 231 | WP_061496660.1 | DNA polymerase III subunit theta | - |
| O9K67_RS10425 (O9K67_10425) | 2128121..2128495 | + | 375 | WP_061496658.1 | CopC domain-containing protein YobA | - |
| O9K67_RS10430 (O9K67_10430) | 2128498..2129367 | + | 870 | WP_061496656.1 | copper homeostasis membrane protein CopD | - |
| O9K67_RS10435 (O9K67_10435) | 2129386..2129724 | + | 339 | WP_061496654.1 | YebY family protein | - |
| - | 2129821..2129983 | - | 163 | - | - | Antitoxin |
| - | 2129881..2129983 | + | 103 | - | - | Toxin |
| O9K67_RS10440 (O9K67_10440) | 2130498..2131445 | - | 948 | WP_061496649.1 | VirK/YbjX family protein | - |
| O9K67_RS10445 (O9K67_10445) | 2131620..2132264 | + | 645 | WP_061496647.1 | protein-serine/threonine phosphatase | - |
| O9K67_RS10450 (O9K67_10450) | 2132265..2132456 | - | 192 | WP_061496644.1 | YebW family protein | - |
| O9K67_RS10455 (O9K67_10455) | 2132562..2132801 | - | 240 | WP_061496641.1 | YebV family protein | - |
| O9K67_RS10460 (O9K67_10460) | 2132917..2134356 | - | 1440 | WP_148654716.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T267212 NZ_CP115659:2129881-2129983 [Kosakonia oryzendophytica]
GCCAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTTTTTTT
GCCAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 163 bp
>AT267212 NZ_CP115659:c2129983-2129821 [Kosakonia oryzendophytica]
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTCGCCTGGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGACAAAAGTGGTCAAAA
AAA
AAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTCGCCTGGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGACAAAAGTGGTCAAAA
AAA
