Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/CC2985(antitoxin)
Location 3418674..3419223 Replicon chromosome
Accession NZ_CP115463
Organism Caulobacter sp. NIBR1757

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag O5I81_RS16585 Protein ID WP_271065971.1
Coordinates 3418912..3419223 (+) Length 104 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag O5I81_RS16580 Protein ID WP_271065970.1
Coordinates 3418674..3418922 (+) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
O5I81_RS16560 (AMEJIAPC_03287) 3414502..3417027 + 2526 WP_271065966.1 helicase-related protein -
O5I81_RS16565 (AMEJIAPC_03288) 3417024..3417314 + 291 WP_271065967.1 RNA-binding S4 domain-containing protein -
O5I81_RS16570 (AMEJIAPC_03289) 3417427..3417768 + 342 WP_271065968.1 ferredoxin family protein -
O5I81_RS16575 (AMEJIAPC_03290) 3418049..3418552 + 504 WP_271065969.1 CarD family transcriptional regulator -
O5I81_RS16580 (AMEJIAPC_03291) 3418674..3418922 + 249 WP_271065970.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
O5I81_RS16585 (AMEJIAPC_03292) 3418912..3419223 + 312 WP_271065971.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
O5I81_RS16590 (AMEJIAPC_03293) 3419286..3420155 + 870 WP_271065972.1 RNA polymerase factor sigma-32 -
O5I81_RS16595 (AMEJIAPC_03294) 3420149..3420892 - 744 WP_271065973.1 thermonuclease family protein -
O5I81_RS16600 (AMEJIAPC_03295) 3420889..3422196 - 1308 WP_271065974.1 C4-dicarboxylate transporter DctA -
O5I81_RS16605 (AMEJIAPC_03296) 3422502..3422891 - 390 WP_271065975.1 response regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-91)

Antitoxin

Antitoxin ParD

(1-77)


Sequences

Toxin        


Download         Length: 104 a.a.        Molecular weight: 11587.96 Da        Isoelectric Point: 6.0680

>T267161 WP_271065971.1 NZ_CP115463:3418912-3419223 [Caulobacter sp. NIBR1757]
MKARLSVRAQQDLIDIYATGVRLFGVAQADRYQDGFEAAFDFIADYPLASRERAGAFRSARIHPYKSHVIVYLLDSDGVL
IVRIRHGHEDWANDPAGPDDLNN

Download         Length: 312 bp

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9193.32 Da        Isoelectric Point: 4.8151

>AT267161 WP_271065970.1 NZ_CP115463:3418674-3418922 [Caulobacter sp. NIBR1757]
MATMNVSLPDAMKDWVERQADDGRYSNSSDYVRDLIRRDQERTRKIVAMNALIEEGIASGVGTMTMDEIRAAGRRKAGLD
ES

Download         Length: 249 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References