Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1379552..1379823 | Replicon | chromosome |
| Accession | NZ_CP114896 | ||
| Organism | Escherichia coli strain CM93 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1379590..1379693 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1379552..1379823 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O6117_RS06860 | 1376709..1378148 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| O6117_RS06865 | 1378266..1378502 | + | 237 | WP_001295499.1 | YebV family protein | - |
| O6117_RS06870 | 1378607..1378798 | + | 192 | WP_000457842.1 | YebW family protein | - |
| O6117_RS06875 | 1378799..1379455 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1379552..1379823 | + | 272 | - | - | Antitoxin |
| - | 1379590..1379693 | - | 104 | - | - | Toxin |
| O6117_RS06880 | 1379851..1380192 | - | 342 | WP_000976476.1 | YebY family protein | - |
| O6117_RS06885 | 1380205..1381077 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| O6117_RS06890 | 1381081..1381455 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| O6117_RS06895 | 1381594..1381824 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| O6117_RS06900 | 1381926..1382582 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| O6117_RS06905 | 1382606..1383268 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T267022 NZ_CP114896:c1379693-1379590 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT267022 NZ_CP114896:1379552-1379823 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
