Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 1084566..1085184 Replicon chromosome
Accession NZ_CP114895
Organism Escherichia coli strain CM56

Toxin (Protein)


Gene name Hha Uniprot ID -
Locus tag O6106_RS05310 Protein ID WP_001290581.1
Coordinates 1084566..1084784 (-) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID S1PTH5
Locus tag O6106_RS05315 Protein ID WP_000344800.1
Coordinates 1084810..1085184 (-) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
O6106_RS05275 (1079855) 1079855..1080427 + 573 WP_000779842.1 YbaY family lipoprotein -
O6106_RS05280 (1080458) 1080458..1080769 - 312 WP_000409911.1 MGMT family protein -
O6106_RS05290 (1081148) 1081148..1081501 + 354 WP_000878140.1 DUF1428 domain-containing protein -
O6106_RS05295 (1081543) 1081543..1083093 - 1551 WP_001310610.1 cyclic-guanylate-specific phosphodiesterase PdeB -
O6106_RS05300 (1083257) 1083257..1083727 - 471 WP_000136192.1 YlaC family protein -
O6106_RS05305 (1083843) 1083843..1084394 - 552 WP_000102564.1 maltose O-acetyltransferase -
O6106_RS05310 (1084566) 1084566..1084784 - 219 WP_001290581.1 HHA domain-containing protein Toxin
O6106_RS05315 (1084810) 1084810..1085184 - 375 WP_000344800.1 Hha toxicity modulator TomB Antitoxin
O6106_RS05320 (1085730) 1085730..1088879 - 3150 WP_001132469.1 efflux RND transporter permease AcrB -
O6106_RS05325 (1088902) 1088902..1090095 - 1194 WP_001295324.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-117)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8678.06 Da        Isoelectric Point: 8.9008

>T266996 WP_001290581.1 NZ_CP114895:c1084784-1084566 [Escherichia coli]
MSEKFLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFIR

Download         Length: 219 bp

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14557.39 Da        Isoelectric Point: 4.7395

>AT266996 WP_000344800.1 NZ_CP114895:c1085184-1084810 [Escherichia coli]
MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDPTSAINLQLNELIEHIATFALNYKIKYNEDNKLIEQIDEYL
DDTFMLFSSYGINMQDLQKWRKSGNRLFRCFVNATKENPASLSC

Download         Length: 375 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9QBQ5

References