Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3192538..3192809 | Replicon | chromosome |
| Accession | NZ_CP114893 | ||
| Organism | Escherichia coli strain CM13 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3192668..3192771 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3192538..3192809 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O6R07_RS15490 | 3189093..3189755 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| O6R07_RS15495 | 3189779..3190435 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| O6R07_RS15500 | 3190537..3190767 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| O6R07_RS15505 | 3190906..3191280 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| O6R07_RS15510 | 3191284..3192156 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| O6R07_RS15515 | 3192169..3192510 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 3192538..3192809 | - | 272 | - | - | Antitoxin |
| - | 3192668..3192771 | + | 104 | - | - | Toxin |
| O6R07_RS15520 | 3192906..3193562 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| O6R07_RS15525 | 3193563..3193754 | - | 192 | WP_000457842.1 | YebW family protein | - |
| O6R07_RS15530 | 3193859..3194095 | - | 237 | WP_001295499.1 | YebV family protein | - |
| O6R07_RS15535 | 3194213..3195652 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T266957 NZ_CP114893:3192668-3192771 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT266957 NZ_CP114893:c3192809-3192538 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
