Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1142026..1142297 | Replicon | chromosome |
| Accession | NZ_CP114892 | ||
| Organism | Escherichia coli strain CM5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1142064..1142167 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1142026..1142297 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O6Q95_RS05720 | 1139183..1140622 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| O6Q95_RS05725 | 1140740..1140976 | + | 237 | WP_001295499.1 | YebV family protein | - |
| O6Q95_RS05730 | 1141081..1141272 | + | 192 | WP_000457842.1 | YebW family protein | - |
| O6Q95_RS05735 | 1141273..1141929 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1142026..1142297 | + | 272 | - | - | Antitoxin |
| - | 1142064..1142167 | - | 104 | - | - | Toxin |
| O6Q95_RS05740 | 1142325..1142666 | - | 342 | WP_000976476.1 | YebY family protein | - |
| O6Q95_RS05745 | 1142679..1143551 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| O6Q95_RS05750 | 1143555..1143929 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| O6Q95_RS05755 | 1144068..1144298 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| O6Q95_RS05760 | 1144400..1145056 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| O6Q95_RS05765 | 1145080..1145742 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T266921 NZ_CP114892:c1142167-1142064 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT266921 NZ_CP114892:1142026-1142297 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
