Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1443695..1443966 | Replicon | chromosome |
| Accession | NZ_CP114891 | ||
| Organism | Escherichia coli strain CM2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1443825..1443928 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1443695..1443966 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O6Q44_RS06975 | 1440250..1440912 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| O6Q44_RS06980 | 1440936..1441592 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| O6Q44_RS06985 | 1441694..1441924 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| O6Q44_RS06990 | 1442063..1442437 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| O6Q44_RS06995 | 1442441..1443313 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| O6Q44_RS07000 | 1443326..1443667 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1443695..1443966 | - | 272 | - | - | Antitoxin |
| - | 1443825..1443928 | + | 104 | - | - | Toxin |
| O6Q44_RS07005 | 1444063..1444719 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| O6Q44_RS07010 | 1444720..1444911 | - | 192 | WP_000457842.1 | YebW family protein | - |
| O6Q44_RS07015 | 1445016..1445252 | - | 237 | WP_001295499.1 | YebV family protein | - |
| O6Q44_RS07020 | 1445370..1446809 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T266901 NZ_CP114891:1443825-1443928 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT266901 NZ_CP114891:c1443966-1443695 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
