Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2824950..2825093 | Replicon | chromosome |
| Accession | NZ_CP114801 | ||
| Organism | Citrobacter sp. 21OH12SH02A-Citro | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2824955..2825058 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2824950..2825093 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O6D90_RS13775 | 2822119..2823204 | + | 1086 | WP_032931168.1 | RecT family recombinase | - |
| O6D90_RS13780 | 2823244..2823486 | + | 243 | WP_003841647.1 | DUF4060 family protein | - |
| O6D90_RS13785 | 2823551..2823823 | + | 273 | WP_016156226.1 | excisionase | - |
| O6D90_RS13790 | 2823792..2824877 | + | 1086 | WP_016156225.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2824950..2825093 | + | 144 | - | - | Antitoxin |
| - | 2824955..2825058 | - | 104 | - | - | Toxin |
| O6D90_RS13795 | 2825214..2825552 | - | 339 | WP_003833793.1 | YebY family protein | - |
| O6D90_RS13800 | 2825573..2826445 | - | 873 | WP_016156224.1 | copper homeostasis membrane protein CopD | - |
| O6D90_RS13805 | 2826449..2826823 | - | 375 | WP_016156223.1 | CopC domain-containing protein YobA | - |
| O6D90_RS13810 | 2826967..2827197 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| O6D90_RS13815 | 2827304..2827960 | + | 657 | WP_016156222.1 | carbon-nitrogen hydrolase family protein | - |
| O6D90_RS13820 | 2827984..2828646 | + | 663 | WP_016152773.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2770159..2844936 | 74777 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T266845 NZ_CP114801:c2825058-2824955 [Citrobacter sp. 21OH12SH02A-Citro]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT266845 NZ_CP114801:2824950-2825093 [Citrobacter sp. 21OH12SH02A-Citro]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
