Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2082025..2082191 | Replicon | chromosome |
| Accession | NZ_CP114772 | ||
| Organism | Raoultella planticola strain RP_3045 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2082083..2082186 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2082025..2082191 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O4J57_RS09830 (O4J57_09830) | 2077163..2079223 | + | 2061 | WP_064356915.1 | oligopeptidase B | - |
| O4J57_RS09835 (O4J57_09835) | 2079229..2079888 | - | 660 | WP_032686937.1 | exodeoxyribonuclease X | - |
| O4J57_RS09840 (O4J57_09840) | 2079967..2080197 | - | 231 | WP_004863978.1 | DNA polymerase III subunit theta | - |
| O4J57_RS09845 (O4J57_09845) | 2080324..2080698 | + | 375 | WP_032695279.1 | CopC domain-containing protein YobA | - |
| O4J57_RS09850 (O4J57_09850) | 2080702..2081571 | + | 870 | WP_032686939.1 | copper homeostasis membrane protein CopD | - |
| O4J57_RS09855 (O4J57_09855) | 2081588..2081926 | + | 339 | WP_032686940.1 | YebY family protein | - |
| - | 2082025..2082191 | - | 167 | - | - | Antitoxin |
| - | 2082083..2082186 | + | 104 | - | - | Toxin |
| O4J57_RS09860 (O4J57_09860) | 2082506..2082649 | - | 144 | WP_142131748.1 | Ecr family regulatory small membrane protein | - |
| O4J57_RS09865 (O4J57_09865) | 2082770..2083741 | - | 972 | WP_278078230.1 | VirK/YbjX family protein | - |
| O4J57_RS09870 (O4J57_09870) | 2083884..2084528 | + | 645 | WP_278076605.1 | protein-serine/threonine phosphatase | - |
| O4J57_RS09875 (O4J57_09875) | 2084534..2084725 | - | 192 | WP_032686984.1 | YebW family protein | - |
| O4J57_RS09880 (O4J57_09880) | 2084819..2085058 | - | 240 | WP_004863958.1 | YebV family protein | - |
| O4J57_RS09885 (O4J57_09885) | 2085173..2086606 | - | 1434 | WP_131056043.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T266823 NZ_CP114772:2082083-2082186 [Raoultella planticola]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 167 bp
>AT266823 NZ_CP114772:c2082191-2082025 [Raoultella planticola]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAGCAAAAGTGGT
CGAATAA
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAGCAAAAGTGGT
CGAATAA
