Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2009061..2009332 | Replicon | chromosome |
| Accession | NZ_CP114592 | ||
| Organism | Escherichia coli strain WEC | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2009191..2009294 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2009061..2009332 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O3296_RS09715 | 2005616..2006278 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| O3296_RS09720 | 2006302..2006958 | - | 657 | WP_000011659.1 | carbon-nitrogen hydrolase family protein YobB | - |
| O3296_RS09725 | 2007060..2007290 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| O3296_RS09730 | 2007429..2007803 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| O3296_RS09735 | 2007807..2008679 | + | 873 | WP_001569950.1 | copper homeostasis membrane protein CopD | - |
| O3296_RS09740 | 2008692..2009033 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2009061..2009332 | - | 272 | - | - | Antitoxin |
| - | 2009191..2009294 | + | 104 | - | - | Toxin |
| O3296_RS09745 | 2009429..2010085 | + | 657 | WP_063625304.1 | protein-serine/threonine phosphatase | - |
| O3296_RS09750 | 2010086..2010277 | - | 192 | WP_001296140.1 | YebW family protein | - |
| O3296_RS09755 | 2010382..2010618 | - | 237 | WP_001295499.1 | YebV family protein | - |
| O3296_RS09760 | 2010736..2012175 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T266765 NZ_CP114592:2009191-2009294 [Escherichia coli]
GGCAAGGCAACTAAGTCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGTCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT266765 NZ_CP114592:c2009332-2009061 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAAATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGACTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAAATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGACTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
