Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RHH(antitoxin)
Location 230286..230821 Replicon plasmid unnamed
Accession NZ_CP114587
Organism Salinivibrio kushneri strain TGB4

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag O4598_RS13815 Protein ID WP_269601090.1
Coordinates 230286..230561 (-) Length 92 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag O4598_RS13820 Protein ID WP_077486570.1
Coordinates 230561..230821 (-) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
O4598_RS13800 (O4598_13800) 226258..226740 + 483 WP_069362953.1 anaerobic ribonucleoside-triphosphate reductase-activating protein -
O4598_RS13805 (O4598_13805) 226830..228014 + 1185 WP_077523153.1 amino acid aminotransferase -
O4598_RS13810 (O4598_13810) 228184..230175 + 1992 WP_269601089.1 methyl-accepting chemotaxis protein -
O4598_RS13815 (O4598_13815) 230286..230561 - 276 WP_269601090.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
O4598_RS13820 (O4598_13820) 230561..230821 - 261 WP_077486570.1 ribbon-helix-helix domain-containing protein Antitoxin
O4598_RS13825 (O4598_13825) 230906..231850 - 945 WP_269601093.1 ribosome biogenesis GTPase YlqF -
O4598_RS13830 (O4598_13830) 232176..233078 - 903 WP_269587812.1 NAD(P)-dependent oxidoreductase -
O4598_RS13835 (O4598_13835) 233195..234943 + 1749 WP_269601094.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - - 1..562514 562514


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-90)

Antitoxin

Ribbon-helix-helix protein, CopG

(6-41)


Sequences

Toxin        


Download         Length: 92 a.a.        Molecular weight: 10732.34 Da        Isoelectric Point: 9.4100

>T266751 WP_269601090.1 NZ_CP114587:c230561-230286 [Salinivibrio kushneri]
MEIKWTSKALSDLNRLYDFLAPADATAAAKVIRSLTSAPNILSDQPRLGERLDAFEPREVRRLLVGSYEMRYEIQEYTMY
VLRIWHTREKR

Download         Length: 276 bp

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9660.86 Da        Isoelectric Point: 4.6389

>AT266751 WP_077486570.1 NZ_CP114587:c230821-230561 [Salinivibrio kushneri]
MNTKVVTAHVPLQLADKVDELAQRLERSKAWVVKQALTDWVVMEEERHKLTLDALADVDNDRVTDHQSVQAWAESLGSES
PKDLPG

Download         Length: 261 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References