Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/ParE-RHH
Location 1586502..1587064 Replicon chromosome
Accession NZ_CP114584
Organism Salinivibrio proteolyticus strain TGB10

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag N7E60_RS07530 Protein ID WP_269596996.1
Coordinates 1586502..1586819 (-) Length 106 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag N7E60_RS07535 Protein ID WP_269596997.1
Coordinates 1586816..1587064 (-) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
N7E60_RS07520 (N7E60_07520) 1581920..1585366 - 3447 WP_269596993.1 type I-F CRISPR-associated helicase Cas3f -
N7E60_RS07525 (N7E60_07525) 1585363..1586334 - 972 WP_269596995.1 type I-F CRISPR-associated endonuclease Cas1f -
N7E60_RS07530 (N7E60_07530) 1586502..1586819 - 318 WP_269596996.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
N7E60_RS07535 (N7E60_07535) 1586816..1587064 - 249 WP_269596997.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
N7E60_RS07540 (N7E60_07540) 1587986..1588270 + 285 WP_069587016.1 TIGR03643 family protein -
N7E60_RS07545 (N7E60_07545) 1588592..1589755 - 1164 WP_269596998.1 amidase family protein -
N7E60_RS07550 (N7E60_07550) 1589877..1591043 - 1167 WP_269596999.1 DnaJ domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(10-97)

Antitoxin

Antitoxin ParD

(3-68)


Sequences

Toxin        


Download         Length: 106 a.a.        Molecular weight: 12479.35 Da        Isoelectric Point: 10.4982

>T266744 WP_269596996.1 NZ_CP114584:c1586819-1586502 [Salinivibrio proteolyticus]
MTASQIKKQVRITPRARDDLKNIGRYTERKWGKAQRNTYLKRLATRFNWLAENPQLGQHRTDIENGYYCFPEGQHLVFYL
IRRHAIDIIGVPHKEMDIINHFTIG

Download         Length: 318 bp

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9117.05 Da        Isoelectric Point: 4.2178

>AT266744 WP_269596997.1 NZ_CP114584:c1587064-1586816 [Salinivibrio proteolyticus]
MATTSLSLGEHWEVFIKNEVASGRYGSASEVVRDALRTLEERKTKLDVLRAHLDEGAKQAASDTFIDDFSMDELINDLDA
ES

Download         Length: 249 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References