Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | PumAB/COG3657-dnstrm_HI1420 |
Location | 1015309..1015901 | Replicon | chromosome |
Accession | NZ_CP114551 | ||
Organism | Xylella fastidiosa subsp. pauca strain OLI17A |
Toxin (Protein)
Gene name | PumA | Uniprot ID | Q9PD07 |
Locus tag | O4443_RS04540 | Protein ID | WP_010894094.1 |
Coordinates | 1015605..1015901 (-) | Length | 99 a.a. |
Antitoxin (Protein)
Gene name | PumB | Uniprot ID | - |
Locus tag | O4443_RS04535 | Protein ID | WP_004085592.1 |
Coordinates | 1015309..1015602 (-) | Length | 98 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
O4443_RS04485 (O4443_04485) | 1011130..1011306 | + | 177 | WP_088371569.1 | Blp family class II bacteriocin | - |
O4443_RS04490 (O4443_04490) | 1011340..1011528 | + | 189 | WP_088371567.1 | hypothetical protein | - |
O4443_RS04495 (O4443_04495) | 1011533..1011703 | - | 171 | WP_088372206.1 | antitoxin | - |
O4443_RS04500 (O4443_04500) | 1011756..1012031 | - | 276 | WP_060871810.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
O4443_RS04505 (O4443_04505) | 1012015..1012242 | - | 228 | WP_031336679.1 | DUF6290 family protein | - |
O4443_RS04510 (O4443_04510) | 1012351..1013121 | + | 771 | WP_088371565.1 | hypothetical protein | - |
O4443_RS04515 (O4443_04515) | 1013121..1013438 | + | 318 | WP_010894089.1 | hypothetical protein | - |
O4443_RS04520 (O4443_04520) | 1013435..1014265 | + | 831 | WP_088371563.1 | hypothetical protein | - |
O4443_RS04525 (O4443_04525) | 1014262..1014903 | + | 642 | WP_088371561.1 | Gp138 family membrane-puncturing spike protein | - |
O4443_RS04530 (O4443_04530) | 1014900..1015253 | + | 354 | WP_088372030.1 | hypothetical protein | - |
O4443_RS04535 (O4443_04535) | 1015309..1015602 | - | 294 | WP_004085592.1 | putative addiction module antidote protein | Antitoxin |
O4443_RS04540 (O4443_04540) | 1015605..1015901 | - | 297 | WP_010894094.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
O4443_RS04545 (O4443_04545) | 1016096..1016302 | - | 207 | WP_171817075.1 | hypothetical protein | - |
O4443_RS04550 (O4443_04550) | 1016502..1016948 | - | 447 | WP_031336674.1 | hypothetical protein | - |
O4443_RS04555 (O4443_04555) | 1017190..1018167 | - | 978 | WP_023906642.1 | hypothetical protein | - |
O4443_RS04560 (O4443_04560) | 1018164..1019039 | - | 876 | WP_023906641.1 | ABC transporter ATP-binding protein | - |
O4443_RS04565 (O4443_04565) | 1019258..1019419 | + | 162 | WP_010894100.1 | hypothetical protein | - |
O4443_RS04570 (O4443_04570) | 1019785..1020357 | + | 573 | WP_282454493.1 | glutathione peroxidase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Prophage | - | - | 987252..1015901 | 28649 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 99 a.a. Molecular weight: 11167.73 Da Isoelectric Point: 9.8173
>T266711 WP_010894094.1 NZ_CP114551:c1015901-1015605 [Xylella fastidiosa subsp. pauca]
MIELKQTDTFRKWREKLKDARARSAIASRLDRLAFGHVGDAEPVGKGVSELRINYGPGYRVYFQQRGDTIYLLLCGGDKG
LQARDIKTALHLSEQWSE
MIELKQTDTFRKWREKLKDARARSAIASRLDRLAFGHVGDAEPVGKGVSELRINYGPGYRVYFQQRGDTIYLLLCGGDKG
LQARDIKTALHLSEQWSE
Download Length: 297 bp
Antitoxin
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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