Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YafQ-RelB
Location 668201..668782 Replicon chromosome
Accession NZ_CP114542
Organism Brevundimonas subvibrioides strain Br6

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag O3139_RS03305 Protein ID WP_269515487.1
Coordinates 668201..668422 (-) Length 74 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag O3139_RS03310 Protein ID WP_269515488.1
Coordinates 668510..668782 (-) Length 91 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
O3139_RS03280 663288..664097 + 810 WP_269515483.1 phosphonate ABC transporter ATP-binding protein -
O3139_RS03285 664094..665104 + 1011 WP_269515484.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
O3139_RS03290 665125..665907 + 783 WP_269516403.1 phosphonate ABC transporter, permease protein PhnE -
O3139_RS03295 665943..667016 + 1074 WP_269515485.1 substrate-binding domain-containing protein -
O3139_RS03300 667020..668105 - 1086 WP_269515486.1 glycosyltransferase family 1 protein -
O3139_RS03305 668201..668422 - 222 WP_269515487.1 type II toxin-antitoxin system YafQ family toxin Toxin
O3139_RS03310 668510..668782 - 273 WP_269515488.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
O3139_RS03315 668882..672022 + 3141 WP_269515489.1 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA -
O3139_RS03320 672254..673045 + 792 WP_269515490.1 hypothetical protein -
O3139_RS03325 673365..673715 + 351 WP_269515491.1 metalloregulator ArsR/SmtB family transcription factor -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(4-71)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-85)


Sequences

Toxin        


Download         Length: 74 a.a.        Molecular weight: 8176.47 Da        Isoelectric Point: 7.2428

>T266675 WP_269515487.1 NZ_CP114542:c668422-668201 [Brevundimonas subvibrioides]
MRRLKGVVLALIANDAPLGPEWKDHPLKGRWLGYRECHIGGDCLLIYEVDDTVGKSGKIVFTRIGTHADLFNE

Download         Length: 222 bp

Antitoxin


Download         Length: 91 a.a.        Molecular weight: 9586.08 Da        Isoelectric Point: 5.0623

>AT266675 WP_269515488.1 NZ_CP114542:c668782-668510 [Brevundimonas subvibrioides]
MAATAMLHVRMDKDLKARGNAALAAIGLSAADAVRLLYHRIVADQAFPLELKVPNATTLEAMAETEALMRSGEPGFADAK
AMFRALDGED

Download         Length: 273 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References