Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/YafQ-RelB |
Location | 668201..668782 | Replicon | chromosome |
Accession | NZ_CP114542 | ||
Organism | Brevundimonas subvibrioides strain Br6 |
Toxin (Protein)
Gene name | relE | Uniprot ID | - |
Locus tag | O3139_RS03305 | Protein ID | WP_269515487.1 |
Coordinates | 668201..668422 (-) | Length | 74 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | - |
Locus tag | O3139_RS03310 | Protein ID | WP_269515488.1 |
Coordinates | 668510..668782 (-) | Length | 91 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
O3139_RS03280 | 663288..664097 | + | 810 | WP_269515483.1 | phosphonate ABC transporter ATP-binding protein | - |
O3139_RS03285 | 664094..665104 | + | 1011 | WP_269515484.1 | phosphate/phosphite/phosphonate ABC transporter substrate-binding protein | - |
O3139_RS03290 | 665125..665907 | + | 783 | WP_269516403.1 | phosphonate ABC transporter, permease protein PhnE | - |
O3139_RS03295 | 665943..667016 | + | 1074 | WP_269515485.1 | substrate-binding domain-containing protein | - |
O3139_RS03300 | 667020..668105 | - | 1086 | WP_269515486.1 | glycosyltransferase family 1 protein | - |
O3139_RS03305 | 668201..668422 | - | 222 | WP_269515487.1 | type II toxin-antitoxin system YafQ family toxin | Toxin |
O3139_RS03310 | 668510..668782 | - | 273 | WP_269515488.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
O3139_RS03315 | 668882..672022 | + | 3141 | WP_269515489.1 | bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA | - |
O3139_RS03320 | 672254..673045 | + | 792 | WP_269515490.1 | hypothetical protein | - |
O3139_RS03325 | 673365..673715 | + | 351 | WP_269515491.1 | metalloregulator ArsR/SmtB family transcription factor | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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