Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2040663..2040807 | Replicon | chromosome |
| Accession | NZ_CP114361 | ||
| Organism | Klebsiella variicola strain 2022CK-00568 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2040699..2040801 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2040663..2040807 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OPU52_RS09870 (OPU52_09870) | 2035793..2037853 | + | 2061 | WP_071582979.1 | oligopeptidase B | - |
| OPU52_RS09875 (OPU52_09875) | 2037857..2038516 | - | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| OPU52_RS09880 (OPU52_09880) | 2038595..2038825 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| OPU52_RS09885 (OPU52_09885) | 2038939..2039313 | + | 375 | WP_016161388.1 | CopC domain-containing protein YobA | - |
| OPU52_RS09890 (OPU52_09890) | 2039317..2040186 | + | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| OPU52_RS09895 (OPU52_09895) | 2040203..2040541 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 2040663..2040807 | - | 145 | - | - | Antitoxin |
| - | 2040699..2040801 | + | 103 | - | - | Toxin |
| OPU52_RS09900 (OPU52_09900) | 2041186..2041329 | - | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| OPU52_RS09905 (OPU52_09905) | 2041433..2042401 | - | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| OPU52_RS09910 (OPU52_09910) | 2042558..2043211 | + | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| OPU52_RS09915 (OPU52_09915) | 2043208..2043399 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OPU52_RS09920 (OPU52_09920) | 2043497..2043736 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OPU52_RS09925 (OPU52_09925) | 2043852..2045285 | - | 1434 | WP_008804274.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T266616 NZ_CP114361:2040699-2040801 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT266616 NZ_CP114361:c2040807-2040663 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
