Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2039464..2039608 | Replicon | chromosome |
| Accession | NZ_CP114312 | ||
| Organism | Klebsiella variicola strain 2022CK-00500 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2039500..2039602 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2039464..2039608 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OEE47_RS09860 (OEE47_09860) | 2034594..2036654 | + | 2061 | WP_071582979.1 | oligopeptidase B | - |
| OEE47_RS09865 (OEE47_09865) | 2036658..2037317 | - | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| OEE47_RS09870 (OEE47_09870) | 2037396..2037626 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| OEE47_RS09875 (OEE47_09875) | 2037740..2038114 | + | 375 | WP_016161388.1 | CopC domain-containing protein YobA | - |
| OEE47_RS09880 (OEE47_09880) | 2038118..2038987 | + | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| OEE47_RS09885 (OEE47_09885) | 2039004..2039342 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 2039464..2039608 | - | 145 | - | - | Antitoxin |
| - | 2039500..2039602 | + | 103 | - | - | Toxin |
| OEE47_RS09890 (OEE47_09890) | 2039987..2040130 | - | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| OEE47_RS09895 (OEE47_09895) | 2040234..2041202 | - | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| OEE47_RS09900 (OEE47_09900) | 2041359..2042012 | + | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| OEE47_RS09905 (OEE47_09905) | 2042009..2042200 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OEE47_RS09910 (OEE47_09910) | 2042298..2042537 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OEE47_RS09915 (OEE47_09915) | 2042653..2044086 | - | 1434 | WP_008804274.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T266483 NZ_CP114312:2039500-2039602 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT266483 NZ_CP114312:c2039608-2039464 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
