26648

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) TsdAT/-
Location 2238097..2238611 Replicon chromosome
Accession NC_017341
Organism Staphylococcus aureus subsp. aureus str. JKD6008

Toxin (Protein)


Gene name TsdT Uniprot ID T1YA99
Locus tag SAA6008_RS11465 Protein ID WP_000581792.1
Coordinates 2238097..2238306 (-) Length 70 a.a.

Antitoxin (Protein)


Gene name TsdA Uniprot ID W8UW13
Locus tag SAA6008_RS11470 Protein ID WP_000138932.1
Coordinates 2238318..2238611 (-) Length 98 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
SAA6008_RS11445 2233605..2234963 - 1359 WP_000611462.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
SAA6008_RS11450 2234978..2236048 - 1071 WP_000159631.1 D-alanine--D-alanine ligase -
SAA6008_RS11455 2236366..2237568 + 1203 WP_001109937.1 rod shape-determining protein RodA -
SAA6008_RS11460 2237832..2237969 - 138 WP_000828354.1 hypothetical protein -
SAA6008_RS11465 2238097..2238306 - 210 WP_000581792.1 heavy-metal-associated domain-containing protein Toxin
SAA6008_RS11470 2238318..2238611 - 294 WP_000138932.1 copper-sensing transcriptional repressor CsoR Antitoxin
SAA6008_RS11475 2238777..2240261 + 1485 WP_000571549.1 cardiolipin synthase -
SAA6008_RS11480 2240289..2240936 + 648 WP_001187629.1 HD domain-containing protein -
SAA6008_RS11495 2241749..2242621 - 873 WP_000725802.1 membrane protein insertase YidC -
SAA6008_RS11500 2242707..2243348 - 642 WP_000483153.1 thiamine phosphate synthase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Heavy metal-associated domain, HMA

(23-66)

Antitoxin

Metal-sensitive transcriptional repressor

(14-92)


Sequences

Toxin        


Download         Length: 70 a.a.        Molecular weight: 7843.77 Da        Isoelectric Point: 4.1008

>T26648 WP_000581792.1 NC_017341:c2238306-2238097 [Staphylococcus aureus subsp. aureus str. JKD6008]
MIHQNTIYTAGIETEEQVSQLTERISNMIGVHQVNINIIDGQVTVSYETPANLNSIEKEIYDEGYKIVF

Download         Length: 210 bp

>T26648 NC_017341:c2238306-2238097 [Staphylococcus aureus subsp. aureus str. JKD6008]
ATGATACATCAAAATACGATTTACACAGCGGGAATTGAAACAGAAGAACAAGTAAGTCAATTGACAGAACGCATTTCAAA
TATGATAGGTGTTCATCAAGTGAATATTAATATAATAGATGGTCAAGTAACTGTATCGTATGAGACACCAGCAAATTTGA
ATAGTATTGAAAAAGAAATCTATGATGAAGGATACAAAATTGTATTTTAG

Antitoxin


Download         Length: 98 a.a.        Molecular weight: 11197.82 Da        Isoelectric Point: 6.2243

>AT26648 WP_000138932.1 NC_017341:c2238611-2238318 [Staphylococcus aureus subsp. aureus str. JKD6008]
MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVLTQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQ
EEAMEELLVTFQKLIKD

Download         Length: 294 bp

>AT26648 NC_017341:c2238611-2238318 [Staphylococcus aureus subsp. aureus str. JKD6008]
ATGACTGAACAAGATAATGCACATCATTCTGAACAAATAAAAACGAATCTTAAATCACGTTTAAATCGAATTGAAGGACA
AGTGAGAGCGATTAATCGCATGATTGAAGAAGATGTCTATTGTGATGATGTCCTTACGCAAATAAGAGCGACACGTTCGG
CGTTAAACAGTGTTGCGATAAAGTTATTAGAACAACATATGAAAAGTTGTATTATGAATAAAGTTAATCAAGGTGCTCAG
GAAGAGGCAATGGAAGAGTTATTAGTGACTTTTCAAAAATTGATTAAAGACTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6FF1

Antitoxin

Source ID Structure
AlphaFold DB W8UW13

References