Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2222165..2222310 | Replicon | chromosome |
| Accession | NZ_CP114308 | ||
| Organism | Klebsiella oxytoca strain 2022CK-00499 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2222200..2222303 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2222165..2222310 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OEE41_RS10405 (OEE41_10405) | 2217269..2219329 | + | 2061 | WP_016808307.1 | oligopeptidase B | - |
| OEE41_RS10410 (OEE41_10410) | 2219336..2219995 | - | 660 | WP_004103360.1 | exodeoxyribonuclease X | - |
| OEE41_RS10415 (OEE41_10415) | 2220074..2220304 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| OEE41_RS10420 (OEE41_10420) | 2220440..2220814 | + | 375 | WP_016808306.1 | CopC domain-containing protein YobA | - |
| OEE41_RS10425 (OEE41_10425) | 2220819..2221688 | + | 870 | WP_004103346.1 | copper homeostasis membrane protein CopD | - |
| OEE41_RS10430 (OEE41_10430) | 2221705..2222043 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2222165..2222310 | - | 146 | - | - | Antitoxin |
| - | 2222200..2222303 | + | 104 | - | - | Toxin |
| OEE41_RS10435 (OEE41_10435) | 2222430..2223389 | - | 960 | WP_004113762.1 | spore coat protein U domain-containing protein | - |
| OEE41_RS10440 (OEE41_10440) | 2223401..2225734 | - | 2334 | WP_047720986.1 | fimbria/pilus outer membrane usher protein | - |
| OEE41_RS10445 (OEE41_10445) | 2225737..2226444 | - | 708 | WP_224226407.1 | fimbria/pilus periplasmic chaperone | - |
| OEE41_RS10450 (OEE41_10450) | 2226519..2227037 | - | 519 | WP_023321220.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T266469 NZ_CP114308:2222200-2222303 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 146 bp
>AT266469 NZ_CP114308:c2222310-2222165 [Klebsiella oxytoca]
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
