Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2181713..2181858 | Replicon | chromosome |
| Accession | NZ_CP114305 | ||
| Organism | Klebsiella oxytoca strain 2022CK-00498 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2181748..2181851 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2181713..2181858 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OGU21_RS10245 (OGU21_10250) | 2176817..2178877 | + | 2061 | WP_032726355.1 | oligopeptidase B | - |
| OGU21_RS10250 (OGU21_10255) | 2178884..2179543 | - | 660 | WP_004103360.1 | exodeoxyribonuclease X | - |
| OGU21_RS10255 (OGU21_10260) | 2179622..2179852 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| OGU21_RS10260 (OGU21_10265) | 2179988..2180362 | + | 375 | WP_016808306.1 | CopC domain-containing protein YobA | - |
| OGU21_RS10265 (OGU21_10270) | 2180367..2181236 | + | 870 | WP_004103346.1 | copper homeostasis membrane protein CopD | - |
| OGU21_RS10270 (OGU21_10275) | 2181253..2181591 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2181713..2181858 | - | 146 | - | - | Antitoxin |
| - | 2181748..2181851 | + | 104 | - | - | Toxin |
| OGU21_RS10275 (OGU21_10280) | 2181978..2182937 | - | 960 | WP_269776869.1 | spore coat protein U domain-containing protein | - |
| OGU21_RS10280 (OGU21_10285) | 2182949..2185282 | - | 2334 | WP_269776870.1 | fimbria/pilus outer membrane usher protein | - |
| OGU21_RS10285 (OGU21_10290) | 2185285..2185992 | - | 708 | WP_269776871.1 | fimbria/pilus periplasmic chaperone | - |
| OGU21_RS10290 (OGU21_10295) | 2186067..2186585 | - | 519 | WP_032692328.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T266460 NZ_CP114305:2181748-2181851 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTTTTTTT
Antitoxin
Download Length: 146 bp
>AT266460 NZ_CP114305:c2181858-2181713 [Klebsiella oxytoca]
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
AAAAGATAAAAAAAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGT
