266436

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 1830251..1830929 Replicon chromosome
Accession NZ_CP114280
Organism Dickeya lacustris strain LMG30899

Toxin (Protein)


Gene name cptA Uniprot ID -
Locus tag O1Q98_RS08230 Protein ID WP_125258301.1
Coordinates 1830251..1830682 (-) Length 144 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID -
Locus tag O1Q98_RS08235 Protein ID WP_125258300.1
Coordinates 1830663..1830929 (-) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
O1Q98_RS08210 (O1Q98_08215) 1826186..1826902 - 717 WP_125258305.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
O1Q98_RS08215 (O1Q98_08220) 1826991..1827890 - 900 WP_125258304.1 site-specific tyrosine recombinase XerD -
O1Q98_RS08220 (O1Q98_08225) 1828152..1829477 + 1326 WP_125258303.1 MFS transporter -
O1Q98_RS08225 (O1Q98_08230) 1829586..1830104 + 519 WP_125258302.1 flavodoxin FldB -
O1Q98_RS08230 (O1Q98_08235) 1830251..1830682 - 432 WP_125258301.1 protein YgfX Toxin
O1Q98_RS08235 (O1Q98_08240) 1830663..1830929 - 267 WP_125258300.1 FAD assembly factor SdhE Antitoxin
O1Q98_RS08240 (O1Q98_08245) 1831244..1832224 + 981 WP_125258299.1 tRNA-modifying protein YgfZ -
O1Q98_RS08245 (O1Q98_08250) 1832305..1832955 - 651 WP_125258298.1 hemolysin III family protein -
O1Q98_RS08250 (O1Q98_08255) 1833162..1833770 + 609 WP_125258297.1 HD domain-containing protein -
O1Q98_RS08255 (O1Q98_08260) 1833895..1834536 - 642 WP_125258296.1 LysE family translocator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(2-132)

Antitoxin

Flavinator of succinate dehydrogenase

(8-79)


Sequences

Toxin        


Download         Length: 144 a.a.        Molecular weight: 17014.09 Da        Isoelectric Point: 11.8614

>T266436 WP_125258301.1 NZ_CP114280:c1830682-1830251 [Dickeya lacustris]
VAQWQCDLRVSWRMQLFSLMMHGFLVLMILLAPWPDGYAPLWLGLLTLVVFGFVRSQRVIKLRQGEIALHDENRLRWQQR
DWLMVRRPWMLRSGILLSLRAVNGKEQQRLWLASDSMGSEEWRRLCQLLRQQPLAGIQSSRHH

Download         Length: 432 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10477.93 Da        Isoelectric Point: 5.1281

>AT266436 WP_125258300.1 NZ_CP114280:c1830929-1830663 [Dickeya lacustris]
MDIDNKSRIHWACRRGMRELDISIMPFFEHEYDGLSDDDKRQFIRLLECDDPDLFNWLMNHGEPQDPGLKRMVSLIQTRN
KDRGPVAM

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References