Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | phd-doc/HTH_IclR(antitoxin) |
| Location | 6227263..6228922 | Replicon | chromosome |
| Accession | NZ_CP114201 | ||
| Organism | Delftia acidovorans strain BIM B-1761 | ||
Toxin (Protein)
| Gene name | doc | Uniprot ID | - |
| Locus tag | O1V13_RS28285 | Protein ID | WP_269197679.1 |
| Coordinates | 6228092..6228922 (-) | Length | 277 a.a. |
Antitoxin (Protein)
| Gene name | phd | Uniprot ID | F6ALN8 |
| Locus tag | O1V13_RS28280 | Protein ID | WP_012202883.1 |
| Coordinates | 6227263..6228069 (-) | Length | 269 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O1V13_RS28250 (O1V13_28260) | 6222691..6223461 | - | 771 | WP_012202888.1 | SDR family oxidoreductase | - |
| O1V13_RS28255 (O1V13_28265) | 6224273..6224554 | + | 282 | WP_071954164.1 | hypothetical protein | - |
| O1V13_RS28260 (O1V13_28270) | 6224873..6225220 | + | 348 | WP_013804511.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| O1V13_RS28265 (O1V13_28275) | 6225217..6225525 | + | 309 | WP_269197676.1 | Fis family transcriptional regulator | - |
| O1V13_RS28270 (O1V13_28280) | 6225538..6226299 | - | 762 | WP_269197677.1 | 5'-methylthioadenosine/adenosylhomocysteine nucleosidase | - |
| O1V13_RS28275 (O1V13_28285) | 6226411..6227208 | - | 798 | WP_269197678.1 | aspartate dehydrogenase | - |
| O1V13_RS28280 (O1V13_28290) | 6227263..6228069 | - | 807 | WP_012202883.1 | IclR family transcriptional regulator | Antitoxin |
| O1V13_RS28285 (O1V13_28295) | 6228092..6228922 | - | 831 | WP_269197679.1 | alpha/beta fold hydrolase | Toxin |
| O1V13_RS28290 (O1V13_28300) | 6229096..6229626 | - | 531 | WP_012202881.1 | cupin domain-containing protein | - |
| O1V13_RS28295 (O1V13_28305) | 6229809..6231005 | - | 1197 | WP_269199170.1 | MFS transporter | - |
| O1V13_RS28300 (O1V13_28310) | 6231028..6231912 | - | 885 | WP_016449823.1 | NAD(P)-dependent oxidoreductase | - |
| O1V13_RS28305 (O1V13_28315) | 6232049..6232639 | - | 591 | WP_013804518.1 | TetR/AcrR family transcriptional regulator | - |
| O1V13_RS28310 (O1V13_28320) | 6232721..6233212 | - | 492 | WP_269197680.1 | Lrp/AsnC family transcriptional regulator | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 277 a.a. Molecular weight: 28597.75 Da Isoelectric Point: 7.0403
>T266424 WP_269197679.1 NZ_CP114201:c6228922-6228092 [Delftia acidovorans]
MEQRLQAQFPEHLIALPGGAQAAWREAGDTASDFAVVMLHGISSGAASWLDVALALAPRARVLAWDAPGYGRSTPLAPAA
PTGADYARVLEQSLQALGVRRCLLVGHSLGALMGTPWAVQAGAGRVQQLVLISPAGGYGAPGMGEQQAKVRQGRLAALQE
KGIEGLAAAIDQRLVSPAAPEPVRQWVRWNTARLHAAGYAQAVELLCGSDLGQAAGQLAMPVEVWVGEHDVVTPPAACAA
WAARLGARYVTLAAAGHASVVEQPADVAQRLATLLT
MEQRLQAQFPEHLIALPGGAQAAWREAGDTASDFAVVMLHGISSGAASWLDVALALAPRARVLAWDAPGYGRSTPLAPAA
PTGADYARVLEQSLQALGVRRCLLVGHSLGALMGTPWAVQAGAGRVQQLVLISPAGGYGAPGMGEQQAKVRQGRLAALQE
KGIEGLAAAIDQRLVSPAAPEPVRQWVRWNTARLHAAGYAQAVELLCGSDLGQAAGQLAMPVEVWVGEHDVVTPPAACAA
WAARLGARYVTLAAAGHASVVEQPADVAQRLATLLT
Download Length: 831 bp
Antitoxin
Download Length: 269 a.a. Molecular weight: 29330.45 Da Isoelectric Point: 5.7085
>AT266424 WP_012202883.1 NZ_CP114201:c6228069-6227263 [Delftia acidovorans]
MSDTSETLSNDNDRYTVPALERGLRLLACFTPSQPVWSAPDLARTLALPRSTVFRMLTTLENMGYLQRSGTEYRLGLSVL
RLGYDYLSTQPLAQLAEPVLQALCERLGFTTNLALLDGTSVVYVARIAPAGAFQGAVRVGSRLPAHATVLGRALLQDMDA
DQLRELFGGSELPQFSESTPRDVQQLQQLLLQDRERGYAMGEGFYEPGVSSIAAPVRDAQGRIIAGLGMAVAFTEIAPGR
MAHWVEQVREAAVELTGHLRTQHPGFLR
MSDTSETLSNDNDRYTVPALERGLRLLACFTPSQPVWSAPDLARTLALPRSTVFRMLTTLENMGYLQRSGTEYRLGLSVL
RLGYDYLSTQPLAQLAEPVLQALCERLGFTTNLALLDGTSVVYVARIAPAGAFQGAVRVGSRLPAHATVLGRALLQDMDA
DQLRELFGGSELPQFSESTPRDVQQLQQLLLQDRERGYAMGEGFYEPGVSSIAAPVRDAQGRIIAGLGMAVAFTEIAPGR
MAHWVEQVREAAVELTGHLRTQHPGFLR
Download Length: 807 bp
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|