Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3668046..3668190 | Replicon | chromosome |
| Accession | NZ_CP114168 | ||
| Organism | Klebsiella variicola strain 2022CK-00565 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3668082..3668184 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3668046..3668190 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OIX89_RS17580 (OIX89_17580) | 3663176..3665236 | + | 2061 | WP_071582979.1 | oligopeptidase B | - |
| OIX89_RS17585 (OIX89_17585) | 3665240..3665899 | - | 660 | WP_008804267.1 | exodeoxyribonuclease X | - |
| OIX89_RS17590 (OIX89_17590) | 3665978..3666208 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| OIX89_RS17595 (OIX89_17595) | 3666322..3666696 | + | 375 | WP_016161388.1 | CopC domain-containing protein YobA | - |
| OIX89_RS17600 (OIX89_17600) | 3666700..3667569 | + | 870 | WP_012541262.1 | copper homeostasis membrane protein CopD | - |
| OIX89_RS17605 (OIX89_17605) | 3667586..3667924 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 3668046..3668190 | - | 145 | - | - | Antitoxin |
| - | 3668082..3668184 | + | 103 | - | - | Toxin |
| OIX89_RS17610 (OIX89_17610) | 3668569..3668712 | - | 144 | WP_048268691.1 | Ecr family regulatory small membrane protein | - |
| OIX89_RS17615 (OIX89_17615) | 3668816..3669784 | - | 969 | WP_162493241.1 | VirK/YbjX family protein | - |
| OIX89_RS17620 (OIX89_17620) | 3669941..3670594 | + | 654 | WP_008804273.1 | protein-serine/threonine phosphatase | - |
| OIX89_RS17625 (OIX89_17625) | 3670591..3670782 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OIX89_RS17630 (OIX89_17630) | 3670880..3671119 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OIX89_RS17635 (OIX89_17635) | 3671235..3672668 | - | 1434 | WP_008804274.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T266398 NZ_CP114168:3668082-3668184 [Klebsiella variicola]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT266398 NZ_CP114168:c3668190-3668046 [Klebsiella variicola]
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACCGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
