Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1952428..1952575 | Replicon | chromosome |
| Accession | NZ_CP114160 | ||
| Organism | Klebsiella quasipneumoniae strain 2022CK-00516 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1952469..1952571 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1952428..1952575 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5B28_RS09455 | 1947563..1949623 | + | 2061 | WP_044523975.1 | oligopeptidase B | - |
| N5B28_RS09460 | 1949627..1950286 | - | 660 | WP_023290237.1 | exodeoxyribonuclease X | - |
| N5B28_RS09465 | 1950365..1950595 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| N5B28_RS09470 | 1950708..1951082 | + | 375 | WP_032453372.1 | CopC domain-containing protein YobA | - |
| N5B28_RS09475 | 1951086..1951955 | + | 870 | WP_044523974.1 | copper homeostasis membrane protein CopD | - |
| N5B28_RS09480 | 1951972..1952310 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1952428..1952575 | - | 148 | - | - | Antitoxin |
| - | 1952469..1952571 | + | 103 | - | - | Toxin |
| N5B28_RS09485 | 1952950..1953093 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| N5B28_RS09490 | 1953194..1954162 | - | 969 | WP_072413392.1 | VirK/YbjX family protein | - |
| N5B28_RS09495 | 1954319..1954972 | + | 654 | WP_044523971.1 | protein-serine/threonine phosphatase | - |
| N5B28_RS09500 | 1954969..1955160 | - | 192 | WP_002911395.1 | YebW family protein | - |
| N5B28_RS09505 | 1955258..1955497 | - | 240 | WP_044523970.1 | YebV family protein | - |
| N5B28_RS09510 | 1955613..1957043 | - | 1431 | WP_044523969.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T266357 NZ_CP114160:1952469-1952571 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT266357 NZ_CP114160:c1952575-1952428 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
