Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2153730..2153898 | Replicon | chromosome |
| Accession | NZ_CP114156 | ||
| Organism | Klebsiella michiganensis strain 2022CK-00497 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2153788..2153891 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2153730..2153898 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OEE44_RS10365 (OEE44_10365) | 2148857..2150917 | + | 2061 | WP_014229840.1 | oligopeptidase B | - |
| OEE44_RS10370 (OEE44_10370) | 2150924..2151583 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| OEE44_RS10375 (OEE44_10375) | 2151662..2151892 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| OEE44_RS10380 (OEE44_10380) | 2152028..2152402 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| OEE44_RS10385 (OEE44_10385) | 2152407..2153276 | + | 870 | WP_025106130.1 | copper homeostasis membrane protein CopD | - |
| OEE44_RS10390 (OEE44_10390) | 2153293..2153631 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2153730..2153898 | - | 169 | - | - | Antitoxin |
| - | 2153788..2153891 | + | 104 | - | - | Toxin |
| OEE44_RS10395 (OEE44_10395) | 2154016..2154975 | - | 960 | WP_025106131.1 | spore coat protein U domain-containing protein | - |
| OEE44_RS10400 (OEE44_10400) | 2154990..2157320 | - | 2331 | WP_182094549.1 | fimbria/pilus outer membrane usher protein | - |
| OEE44_RS10405 (OEE44_10405) | 2157323..2158087 | - | 765 | WP_025106133.1 | fimbria/pilus periplasmic chaperone | - |
| OEE44_RS10410 (OEE44_10410) | 2158106..2158624 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2079189..2163911 | 84722 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T266345 NZ_CP114156:2153788-2153891 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT266345 NZ_CP114156:c2153898-2153730 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
