Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2151144..2151312 | Replicon | chromosome |
| Accession | NZ_CP114149 | ||
| Organism | Klebsiella michiganensis strain 2022CK-00496 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2151202..2151305 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2151144..2151312 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OEE45_RS10255 (OEE45_10260) | 2146271..2148331 | + | 2061 | WP_033836507.1 | oligopeptidase B | - |
| OEE45_RS10260 (OEE45_10265) | 2148338..2148997 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| OEE45_RS10265 (OEE45_10270) | 2149076..2149306 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| OEE45_RS10270 (OEE45_10275) | 2149442..2149816 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| OEE45_RS10275 (OEE45_10280) | 2149821..2150690 | + | 870 | WP_014229837.1 | copper homeostasis membrane protein CopD | - |
| OEE45_RS10280 (OEE45_10285) | 2150707..2151045 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2151144..2151312 | - | 169 | - | - | Antitoxin |
| - | 2151202..2151305 | + | 104 | - | - | Toxin |
| OEE45_RS10285 (OEE45_10290) | 2151430..2152389 | - | 960 | WP_042945476.1 | spore coat protein U domain-containing protein | - |
| OEE45_RS10290 (OEE45_10295) | 2152404..2154734 | - | 2331 | WP_064405637.1 | fimbria/pilus outer membrane usher protein | - |
| OEE45_RS10295 (OEE45_10300) | 2154737..2155501 | - | 765 | WP_049082702.1 | fimbria/pilus periplasmic chaperone | - |
| OEE45_RS10300 (OEE45_10305) | 2155520..2156038 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T266330 NZ_CP114149:2151202-2151305 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT266330 NZ_CP114149:c2151312-2151144 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
