266321

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pmenTA/darT(toxin)
Location 779705..781374 Replicon chromosome
Accession NZ_CP114134
Organism Xanthomonas fragariae strain YLX21

Toxin (Protein)


Gene name pmenT Uniprot ID -
Locus tag OZ429_RS03670 Protein ID WP_269126796.1
Coordinates 780775..781374 (-) Length 200 a.a.

Antitoxin (Protein)


Gene name pmenA Uniprot ID -
Locus tag OZ429_RS03665 Protein ID WP_269124963.1
Coordinates 779705..780775 (-) Length 357 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OZ429_RS03635 (OZ429_03635) 774836..775945 + 1110 WP_269124953.1 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase -
OZ429_RS03640 (OZ429_03640) 776130..776960 + 831 WP_269124955.1 S-formylglutathione hydrolase -
OZ429_RS03645 (OZ429_03645) 777059..777397 - 339 WP_269124957.1 hypothetical protein -
OZ429_RS03650 (OZ429_03650) 777463..777702 - 240 Protein_684 DegV family protein -
OZ429_RS03655 (OZ429_03655) 777967..778782 + 816 WP_269124959.1 cellulase -
OZ429_RS03660 (OZ429_03660) 779038..779598 + 561 WP_269124961.1 DUF924 family protein -
OZ429_RS03665 (OZ429_03665) 779705..780775 - 1071 WP_269124963.1 macro domain-containing protein Antitoxin
OZ429_RS03670 (OZ429_03670) 780775..781374 - 600 WP_269126796.1 DUF4433 domain-containing protein Toxin
OZ429_RS03675 (OZ429_03675) 781745..782671 - 927 WP_269124965.1 Grx4 family monothiol glutaredoxin -
OZ429_RS03680 (OZ429_03680) 782717..783508 + 792 WP_269124968.1 polysaccharide deacetylase family protein -
OZ429_RS03685 (OZ429_03685) 783764..784441 + 678 Protein_691 IS30 family transposase -
OZ429_RS03690 (OZ429_03690) 784550..785847 + 1298 Protein_692 IS701 family transposase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

ssDNA thymidine ADP-ribosyltransferase, DarT

(1-199)

Antitoxin

Macro domain

(18-130)


Sequences

Toxin        


Download         Length: 200 a.a.        Molecular weight: 22716.86 Da        Isoelectric Point: 7.2063

>T266321 WP_269126796.1 NZ_CP114134:c781374-780775 [Xanthomonas fragariae]
IVHRDNLPWIMDNGLHCANGGVQSPGWVSIGNPELIAKRANHPVSLAPGGFLNDYVPFYFTPFSPMLRNIHTGWGGIQQR
SNEEIVILVSSLRQVAARGWPFLFTDGHAYSQLTTFHSDLAKLDKIDWPLLQARDFRRDQEDPAKFERYQAEALVHRHLP
VDGLCGIVCYTDDLKLSIERQLKARNLTLPVHARTEWYF

Download         Length: 600 bp

Antitoxin


Download         Length: 357 a.a.        Molecular weight: 39622.65 Da        Isoelectric Point: 5.8202

>AT266321 WP_269124963.1 NZ_CP114134:c780775-779705 [Xanthomonas fragariae]
MIMFTQGNLLQARVEALVNTVNTVGVMGKGIALMFKERFNENFLRYAAACKAKQVRTGKVFVTEANELDGPRWIINFPTK
QHWRGDSRIEWITEGLQDLRLFLIENKVGSIAIPPLGAGNGGLDWADVRPLIEEALAGLDTDILVFEPTVKYQNVAKRSG
VEKLTPARALIAELIRRYWVLGVECSLLEIQKLAWFLERNIERAGLPTLDLRFAPHKYGPYADRLRHLLDGLDGSYLHCD
KRIGDADPIDVIWFDDARKSVVQAYLKSEAKQYAPALEATAALIDGFETPFGMELLATVDWLIAQGGVCPQVADMREGIR
NWPGGADAAVRKDRLFDDRALGIALERLTSSASAVT

Download         Length: 1071 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References