Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1779728..1779999 | Replicon | chromosome |
| Accession | NZ_CP114130 | ||
| Organism | Escherichia coli strain NJS001 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1779858..1779961 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1779728..1779999 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N0F11_RS08705 | 1776283..1776945 | - | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
| N0F11_RS08710 | 1776969..1777625 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N0F11_RS08715 | 1777727..1777957 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| N0F11_RS08720 | 1778096..1778470 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| N0F11_RS08725 | 1778474..1779346 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| N0F11_RS08730 | 1779359..1779700 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 1779728..1779999 | - | 272 | - | - | Antitoxin |
| - | 1779858..1779961 | + | 104 | - | - | Toxin |
| N0F11_RS08735 | 1780096..1780752 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| N0F11_RS08740 | 1780753..1780944 | - | 192 | WP_001296140.1 | YebW family protein | - |
| N0F11_RS08745 | 1781049..1781285 | - | 237 | WP_001295499.1 | YebV family protein | - |
| N0F11_RS08750 | 1781403..1782842 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T266294 NZ_CP114130:1779858-1779961 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT266294 NZ_CP114130:c1779999-1779728 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
