Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2909741..2910012 | Replicon | chromosome |
| Accession | NZ_CP114128 | ||
| Organism | Escherichia coli strain PE164 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2909779..2909882 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2909741..2910012 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZG51_RS14205 | 2906898..2908337 | + | 1440 | WP_053884247.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LZG51_RS14210 | 2908455..2908691 | + | 237 | WP_096220293.1 | YebV family protein | - |
| LZG51_RS14215 | 2908796..2908987 | + | 192 | WP_001313035.1 | YebW family protein | - |
| LZG51_RS14220 | 2908988..2909644 | - | 657 | WP_089637581.1 | protein-serine/threonine phosphatase | - |
| - | 2909741..2910012 | + | 272 | - | - | Antitoxin |
| - | 2909779..2909882 | - | 104 | - | - | Toxin |
| LZG51_RS14225 | 2910040..2910381 | - | 342 | WP_000976472.1 | YebY family protein | - |
| LZG51_RS14230 | 2910394..2911266 | - | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| LZG51_RS14235 | 2911270..2911644 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LZG51_RS14240 | 2911783..2912013 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LZG51_RS14245 | 2912115..2912771 | + | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LZG51_RS14250 | 2912795..2913457 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T266277 NZ_CP114128:c2909882-2909779 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT266277 NZ_CP114128:2909741-2910012 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
