Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/RelE(toxin) |
Location | 4291010..4291479 | Replicon | chromosome |
Accession | NZ_CP114115 | ||
Organism | Pseudomonas sp. GXZC |
Toxin (Protein)
Gene name | relE | Uniprot ID | - |
Locus tag | OZ428_RS19915 | Protein ID | WP_269131027.1 |
Coordinates | 4291010..4291285 (-) | Length | 92 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | - |
Locus tag | OZ428_RS19920 | Protein ID | WP_095015673.1 |
Coordinates | 4291285..4291479 (-) | Length | 65 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
OZ428_RS19885 (OZ428_19885) | 4286950..4287378 | + | 429 | WP_269131023.1 | hypothetical protein | - |
OZ428_RS19890 (OZ428_19890) | 4287375..4287839 | - | 465 | WP_061448885.1 | nuclear transport factor 2 family protein | - |
OZ428_RS19895 (OZ428_19895) | 4287859..4288818 | - | 960 | WP_269131024.1 | saccharopine dehydrogenase NADP-binding domain-containing protein | - |
OZ428_RS19900 (OZ428_19900) | 4288815..4289216 | - | 402 | WP_033896774.1 | VOC family protein | - |
OZ428_RS19905 (OZ428_19905) | 4289233..4289976 | - | 744 | WP_269131025.1 | SDR family oxidoreductase | - |
OZ428_RS19910 (OZ428_19910) | 4290115..4291008 | + | 894 | WP_269131026.1 | AraC family transcriptional regulator | - |
OZ428_RS19915 (OZ428_19915) | 4291010..4291285 | - | 276 | WP_269131027.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
OZ428_RS19920 (OZ428_19920) | 4291285..4291479 | - | 195 | WP_095015673.1 | stability determinant | Antitoxin |
OZ428_RS19925 (OZ428_19925) | 4291624..4293366 | - | 1743 | WP_269131028.1 | ABC transporter substrate-binding protein | - |
OZ428_RS19930 (OZ428_19930) | 4293399..4293671 | - | 273 | WP_016977309.1 | DUF2160 domain-containing protein | - |
OZ428_RS19935 (OZ428_19935) | 4293682..4294482 | - | 801 | WP_003174634.1 | carbohydrate ABC transporter permease | - |
OZ428_RS19940 (OZ428_19940) | 4294493..4295359 | - | 867 | WP_010209674.1 | sugar ABC transporter permease | - |
OZ428_RS19945 (OZ428_19945) | 4295356..4296453 | - | 1098 | WP_269131029.1 | ABC transporter ATP-binding protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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