Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/-
Location 361065..361557 Replicon chromosome
Accession NZ_CP114115
Organism Pseudomonas sp. GXZC

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag OZ428_RS01760 Protein ID WP_269134144.1
Coordinates 361249..361557 (+) Length 103 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag OZ428_RS01755 Protein ID WP_269132562.1
Coordinates 361065..361259 (+) Length 65 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OZ428_RS01735 (OZ428_01735) 356703..357476 - 774 WP_010213906.1 ABC transporter ATP-binding protein -
OZ428_RS01740 (OZ428_01740) 358031..359422 + 1392 WP_033896896.1 GABA permease -
OZ428_RS01745 (OZ428_01745) 359477..359890 - 414 WP_269132561.1 hypothetical protein -
OZ428_RS01750 (OZ428_01750) 359895..360881 - 987 WP_133076498.1 alpha/beta fold hydrolase -
OZ428_RS01755 (OZ428_01755) 361065..361259 + 195 WP_269132562.1 hypothetical protein Antitoxin
OZ428_RS01760 (OZ428_01760) 361249..361557 + 309 WP_269134144.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
OZ428_RS01765 (OZ428_01765) 361599..362564 + 966 WP_269132563.1 arsenic resistance protein -
OZ428_RS01770 (OZ428_01770) 362652..364244 + 1593 WP_269132564.1 hypothetical protein -
OZ428_RS01775 (OZ428_01775) 364333..364608 + 276 WP_028615360.1 hypothetical protein -
OZ428_RS01780 (OZ428_01780) 364961..365206 - 246 WP_000108283.1 DUF2274 domain-containing protein -
OZ428_RS01785 (OZ428_01785) 365203..366483 - 1281 WP_058654952.1 TrbI/VirB10 family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Integrative and Conjugative Element aph(6)-Id / aph(3'')-Ib / aph(3')-Ia / sul1 / tet(G) / floR - 340126..438734 98608


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-88)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 103 a.a.        Molecular weight: 11713.61 Da        Isoelectric Point: 6.9876

>T266250 WP_269134144.1 NZ_CP114115:361249-361557 [Pseudomonas sp. GXZC]
MLVKWRPEAILVLTEIIDFIEQYNPVAAASLHRNIVAATEHLSSMPYGFKQGRLSGTREMVVHPNYLVVYRVMEQVDILT
VLHTRQEYPSDAIVPLHSTLRQ

Download         Length: 309 bp

Antitoxin


Download         Length: 65 a.a.        Molecular weight: 7488.41 Da        Isoelectric Point: 4.7954

>AT266250 WP_269132562.1 NZ_CP114115:361065-361259 [Pseudomonas sp. GXZC]
MSIPLSPIVSEFETEEQAASYDRWFRAKVQASIDDPRPSIPHDEAMAEVERMLEERRKARWAAR

Download         Length: 195 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References