Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2197249..2197338 | Replicon | chromosome |
| Accession | NZ_CP114058 | ||
| Organism | Rouxiella chamberiensis strain DSM 28324 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2197249..2197338 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2197249..2197338 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O1V66_RS10130 (O1V66_10130) | 2193557..2194342 | + | 786 | WP_269128299.1 | DEAD/DEAH box helicase family protein | - |
| O1V66_RS10135 (O1V66_10135) | 2194330..2195751 | + | 1422 | WP_269128300.1 | Z1 domain-containing protein | - |
| O1V66_RS10140 (O1V66_10140) | 2196123..2197159 | + | 1037 | Protein_2001 | tyrosine-type recombinase/integrase | - |
| - | 2197249..2197338 | - | 90 | - | - | Toxin |
| O1V66_RS10145 (O1V66_10145) | 2197615..2197950 | - | 336 | WP_045046533.1 | YebY family protein | - |
| O1V66_RS10150 (O1V66_10150) | 2198006..2198890 | - | 885 | WP_045046532.1 | copper homeostasis membrane protein CopD | - |
| O1V66_RS10155 (O1V66_10155) | 2198894..2199259 | - | 366 | WP_045046877.1 | CopC domain-containing protein YobA | - |
| O1V66_RS10160 (O1V66_10160) | 2199502..2200008 | - | 507 | WP_045046531.1 | non-heme ferritin | - |
| O1V66_RS10165 (O1V66_10165) | 2200425..2200655 | + | 231 | WP_045046530.1 | DNA polymerase III subunit theta | - |
| O1V66_RS10170 (O1V66_10170) | 2200698..2201652 | - | 955 | Protein_2007 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2192089..2207625 | 15536 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 90 bp
>T266231 NZ_CP114058:c2197338-2197249 [Rouxiella chamberiensis]
GCCTGCATCAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAGTATAGGAATCGTACTCG
GTCTTTTTTT
GCCTGCATCAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAGTATAGGAATCGTACTCG
GTCTTTTTTT
Antitoxin
Download Length: 90 bp
>AT266231 NZ_CP114058:2197249-2197338 [Rouxiella chamberiensis]
AAAAAAAGACCGAGTACGATTCCTATACTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TGATGCAGGC
AAAAAAAGACCGAGTACGATTCCTATACTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TGATGCAGGC
