Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relE-dinJ/YafQ-DinJ
Location 368611..369142 Replicon chromosome
Accession NZ_CP113917
Organism Bifidobacterium sp. ESL0775

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag OZX73_RS01095 Protein ID WP_277149844.1
Coordinates 368611..368910 (-) Length 100 a.a.

Antitoxin (Protein)


Gene name dinJ Uniprot ID -
Locus tag OZX73_RS01100 Protein ID WP_277149846.1
Coordinates 368891..369142 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OZX73_RS01085 (OZX73_01085) 365106..367094 - 1989 WP_277149841.1 hypothetical protein -
OZX73_RS01090 (OZX73_01090) 367094..368527 - 1434 WP_277149842.1 hypothetical protein -
OZX73_RS01095 (OZX73_01095) 368611..368910 - 300 WP_277149844.1 type II toxin-antitoxin system YafQ family toxin Toxin
OZX73_RS01100 (OZX73_01100) 368891..369142 - 252 WP_277149846.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
OZX73_RS01105 (OZX73_01105) 369538..370608 - 1071 WP_277149848.1 2,3-butanediol dehydrogenase -
OZX73_RS01110 (OZX73_01110) 370851..371870 - 1020 WP_277150871.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
OZX73_RS01115 (OZX73_01115) 372366..373913 - 1548 WP_277149850.1 sucrose-6-phosphate hydrolase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(8-97)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(5-51)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 11617.59 Da        Isoelectric Point: 9.3865

>T266159 WP_277149844.1 NZ_CP113917:c368910-368611 [Bifidobacterium sp. ESL0775]
MSYGMLSHIKRTGTFLKDVKRLKRKHFDLDKLDYVIKLLMDQDTVTLIHQYDDHALKGNLHTLRELHIQPDWLLVYQIEH
GTLTLVLVETGSHKQLLGK

Download         Length: 300 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9285.55 Da        Isoelectric Point: 5.0790

>AT266159 WP_277149846.1 NZ_CP113917:c369142-368891 [Bifidobacterium sp. ESL0775]
MSSATIAVRTDPEVKKEAQEVLKSIGLDMSGAINIFLRQVISDQGLPFRPKRDAFETRVQKAMNSGTRTFDNVDDLMDEL
RNA

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References