Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2114388..2114556 | Replicon | chromosome |
| Accession | NZ_CP113904 | ||
| Organism | Klebsiella michiganensis strain PS_Koxy4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2114446..2114549 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2114388..2114556 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F0A14_RS10020 (F0A14_010025) | 2109515..2111575 | + | 2061 | WP_014229840.1 | oligopeptidase B | - |
| F0A14_RS10025 (F0A14_010030) | 2111582..2112241 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| F0A14_RS10030 (F0A14_010035) | 2112320..2112550 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| F0A14_RS10035 (F0A14_010040) | 2112686..2113060 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| F0A14_RS10040 (F0A14_010045) | 2113065..2113934 | + | 870 | WP_025106130.1 | copper homeostasis membrane protein CopD | - |
| F0A14_RS10045 (F0A14_010050) | 2113951..2114289 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2114388..2114556 | - | 169 | - | - | Antitoxin |
| - | 2114446..2114549 | + | 104 | - | - | Toxin |
| F0A14_RS10050 (F0A14_010055) | 2114674..2115633 | - | 960 | WP_025106131.1 | spore coat protein U domain-containing protein | - |
| F0A14_RS10055 (F0A14_010060) | 2115648..2117978 | - | 2331 | WP_182094549.1 | fimbria/pilus outer membrane usher protein | - |
| F0A14_RS10060 (F0A14_010065) | 2117981..2118745 | - | 765 | WP_025106133.1 | fimbria/pilus periplasmic chaperone | - |
| F0A14_RS10065 (F0A14_010070) | 2118764..2119282 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T266140 NZ_CP113904:2114446-2114549 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT266140 NZ_CP113904:c2114556-2114388 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
