Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2020253..2020397 | Replicon | chromosome |
| Accession | NZ_CP113789 | ||
| Organism | Klebsiella variicola subsp. tropica strain BSK_177V2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2020289..2020391 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2020253..2020397 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OUI59_RS09975 (OUI59_09975) | 2015383..2017443 | + | 2061 | WP_100630720.1 | oligopeptidase B | - |
| OUI59_RS09980 (OUI59_09980) | 2017447..2018106 | - | 660 | WP_074385460.1 | exodeoxyribonuclease X | - |
| OUI59_RS09985 (OUI59_09985) | 2018185..2018415 | - | 231 | WP_012541260.1 | DNA polymerase III subunit theta | - |
| OUI59_RS09990 (OUI59_09990) | 2018529..2018903 | + | 375 | WP_268657794.1 | CopC domain-containing protein YobA | - |
| OUI59_RS09995 (OUI59_09995) | 2018907..2019776 | + | 870 | WP_268657795.1 | copper homeostasis membrane protein CopD | - |
| OUI59_RS10000 (OUI59_10000) | 2019793..2020131 | + | 339 | WP_008804271.1 | YebY family protein | - |
| - | 2020253..2020397 | - | 145 | - | - | Antitoxin |
| - | 2020289..2020391 | + | 103 | - | - | Toxin |
| OUI59_RS10005 (OUI59_10005) | 2020776..2020919 | - | 144 | WP_142667623.1 | Ecr family regulatory small membrane protein | - |
| OUI59_RS10010 (OUI59_10010) | 2021023..2021991 | - | 969 | WP_268657796.1 | VirK/YbjX family protein | - |
| OUI59_RS10015 (OUI59_10015) | 2022148..2022801 | + | 654 | WP_268657797.1 | protein-serine/threonine phosphatase | - |
| OUI59_RS10020 (OUI59_10020) | 2022798..2022989 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OUI59_RS10025 (OUI59_10025) | 2023087..2023326 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OUI59_RS10030 (OUI59_10030) | 2023442..2024875 | - | 1434 | WP_074385464.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T266049 NZ_CP113789:2020289-2020391 [Klebsiella variicola subsp. tropica]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT266049 NZ_CP113789:c2020397-2020253 [Klebsiella variicola subsp. tropica]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
