Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4066213..4066356 | Replicon | chromosome |
| Accession | NZ_CP113784 | ||
| Organism | Citrobacter freundii strain CFSAN077772 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4066218..4066321 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4066213..4066356 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OW080_RS19455 | 4063403..4064791 | + | 1389 | WP_048241622.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OW080_RS19460 | 4064892..4065128 | + | 237 | WP_029139506.1 | YebV family protein | - |
| OW080_RS19465 | 4065231..4065422 | + | 192 | WP_003034941.1 | YebW family protein | - |
| OW080_RS19470 | 4065423..4066064 | - | 642 | WP_032935394.1 | protein-serine/threonine phosphatase | - |
| - | 4066213..4066356 | + | 144 | - | - | Antitoxin |
| - | 4066218..4066321 | - | 104 | - | - | Toxin |
| OW080_RS19475 | 4066477..4066815 | - | 339 | WP_032935392.1 | YebY family protein | - |
| OW080_RS19480 | 4066836..4067708 | - | 873 | WP_032935389.1 | copper homeostasis membrane protein CopD | - |
| OW080_RS19485 | 4067712..4068086 | - | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| OW080_RS19490 | 4068230..4068460 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| OW080_RS19495 | 4068567..4069223 | + | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| OW080_RS19500 | 4069247..4069909 | + | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T266040 NZ_CP113784:c4066321-4066218 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT266040 NZ_CP113784:4066213-4066356 [Citrobacter freundii]
CAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
