Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/Phd(antitoxin)
Location 3404948..3405513 Replicon chromosome
Accession NZ_CP113783
Organism Pseudoxanthomonas sp. SE1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag OY559_RS16085 Protein ID WP_277727254.1
Coordinates 3404948..3405268 (-) Length 107 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag OY559_RS16090 Protein ID WP_277727255.1
Coordinates 3405256..3405513 (-) Length 86 a.a.

Genomic Context

OY559_RS16065OY559_RS16070OY559_RS16075OY559_RS16080OY559_RS16110OY559_RS16115OY559_RS16085OY559_RS16090OY559_RS16095OY559_RS16100OY559_RS16105OY559_RS16120
Location: 3401576..3402289 (714 bp)
Type: Others
Protein ID: WP_277727250.1
Location: 3402430..3403692 (1263 bp)
Type: Others
Protein ID: WP_277730031.1
Location: 3403689..3404459 (771 bp)
Type: Others
Protein ID: WP_277727251.1
Location: 3404573..3404941 (369 bp)
Type: Others
Protein ID: WP_277727253.1
Location: 3407485..3408945 (1461 bp)
Type: Others
Protein ID: WP_277727259.1
Location: 3408971..3409945 (975 bp)
Type: Others
Protein ID: WP_142125655.1
Location: 3404948..3405268 (321 bp)
Type: Toxin
Protein ID: WP_277727254.1
Location: 3405256..3405513 (258 bp)
Type: Antitoxin
Protein ID: WP_277727255.1
Location: 3405532..3405909 (378 bp)
Type: Others
Protein ID: WP_277727256.1
Location: 3405906..3406253 (348 bp)
Type: Others
Protein ID: WP_277727257.1
Location: 3406332..3407315 (984 bp)
Type: Others
Protein ID: WP_277727258.1
Location: 3409949..3410413 (465 bp)
Type: Others
Protein ID: WP_277727260.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
OY559_RS16065 (OY559_16075)3401576..3402289+714WP_277727250.1phosphoadenylyl-sulfate reductase-
OY559_RS16070 (OY559_16080)3402430..3403692+1263WP_277730031.1histidine kinase-
OY559_RS16075 (OY559_16085)3403689..3404459+771WP_277727251.1LytTR family DNA-binding domain-containing protein-
OY559_RS16080 (OY559_16090)3404573..3404941+369WP_277727253.1hypothetical protein-
OY559_RS16085 (OY559_16095)3404948..3405268-321WP_277727254.1type II toxin-antitoxin system RelE/ParE family toxinToxin
OY559_RS16090 (OY559_16100)3405256..3405513-258WP_277727255.1type II toxin-antitoxin system Phd/YefM family antitoxinAntitoxin
OY559_RS16095 (OY559_16105)3405532..3405909-378WP_277727256.1DUF2809 domain-containing protein-
OY559_RS16100 (OY559_16110)3405906..3406253-348WP_277727257.1hypothetical protein-
OY559_RS16105 (OY559_16115)3406332..3407315-984WP_277727258.1LysR family transcriptional regulator-
OY559_RS16110 (OY559_16120)3407485..3408945+1461WP_277727259.1siroheme synthase CysG-
OY559_RS16115 (OY559_16125)3408971..3409945+975WP_142125655.1cysteine synthase A-
OY559_RS16120 (OY559_16130)3409949..3410413-465WP_277727260.1DUF6265 family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-90)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-71)


Sequences

Toxin        


Download         Length: 107 a.a.        Molecular weight: 12200.20 Da        Isoelectric Point: 10.1506

>T266027 WP_277727254.1 NZ_CP113783:c3405268-3404948 [Pseudoxanthomonas sp. SE1]
MVEIVWSEPALADLDAIADYIALDNRAAAVELVRRVFAHVDHLADHPDSGSRPPELKRGRYRQIVEPPCRVFYRSEPGRV
LLLHVMRSERLLRPGMLQARRPIKPR

Download         Length: 321 bp

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9642.08 Da        Isoelectric Point: 7.2038

>AT266027 WP_277727255.1 NZ_CP113783:c3405513-3405256 [Pseudoxanthomonas sp. SE1]
MRTELVTTLKRQATDLLADVERDREPILITQHGLPSAYLVDVETYETLLSRMAVLEGIARGEQAVAEGRAVTHRQAKDRL
ARWLK

Download         Length: 258 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References