Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/Phd(antitoxin)
Location 3404948..3405513 Replicon chromosome
Accession NZ_CP113783
Organism Pseudoxanthomonas sp. SE1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag OY559_RS16085 Protein ID WP_277727254.1
Coordinates 3404948..3405268 (-) Length 107 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag OY559_RS16090 Protein ID WP_277727255.1
Coordinates 3405256..3405513 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OY559_RS16065 (OY559_16075) 3401576..3402289 + 714 WP_277727250.1 phosphoadenylyl-sulfate reductase -
OY559_RS16070 (OY559_16080) 3402430..3403692 + 1263 WP_277730031.1 histidine kinase -
OY559_RS16075 (OY559_16085) 3403689..3404459 + 771 WP_277727251.1 LytTR family DNA-binding domain-containing protein -
OY559_RS16080 (OY559_16090) 3404573..3404941 + 369 WP_277727253.1 hypothetical protein -
OY559_RS16085 (OY559_16095) 3404948..3405268 - 321 WP_277727254.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
OY559_RS16090 (OY559_16100) 3405256..3405513 - 258 WP_277727255.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
OY559_RS16095 (OY559_16105) 3405532..3405909 - 378 WP_277727256.1 DUF2809 domain-containing protein -
OY559_RS16100 (OY559_16110) 3405906..3406253 - 348 WP_277727257.1 hypothetical protein -
OY559_RS16105 (OY559_16115) 3406332..3407315 - 984 WP_277727258.1 LysR family transcriptional regulator -
OY559_RS16110 (OY559_16120) 3407485..3408945 + 1461 WP_277727259.1 siroheme synthase CysG -
OY559_RS16115 (OY559_16125) 3408971..3409945 + 975 WP_142125655.1 cysteine synthase A -
OY559_RS16120 (OY559_16130) 3409949..3410413 - 465 WP_277727260.1 DUF6265 family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-90)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-71)


Sequences

Toxin        


Download         Length: 107 a.a.        Molecular weight: 12200.20 Da        Isoelectric Point: 10.1506

>T266027 WP_277727254.1 NZ_CP113783:c3405268-3404948 [Pseudoxanthomonas sp. SE1]
MVEIVWSEPALADLDAIADYIALDNRAAAVELVRRVFAHVDHLADHPDSGSRPPELKRGRYRQIVEPPCRVFYRSEPGRV
LLLHVMRSERLLRPGMLQARRPIKPR

Download         Length: 321 bp

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9642.08 Da        Isoelectric Point: 7.2038

>AT266027 WP_277727255.1 NZ_CP113783:c3405513-3405256 [Pseudoxanthomonas sp. SE1]
MRTELVTTLKRQATDLLADVERDREPILITQHGLPSAYLVDVETYETLLSRMAVLEGIARGEQAVAEGRAVTHRQAKDRL
ARWLK

Download         Length: 258 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References