Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2727545..2727690 | Replicon | chromosome |
| Accession | NZ_CP113540 | ||
| Organism | Salmonella enterica strain CYX | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2727547..2727650 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2727545..2727690 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OXV10_RS13480 | 2722745..2722963 | - | 219 | WP_001524708.1 | hypothetical protein | - |
| OXV10_RS13485 | 2723265..2723363 | - | 99 | WP_223151200.1 | hypothetical protein | - |
| OXV10_RS13490 | 2723682..2725661 | - | 1980 | WP_001237395.1 | alkyl sulfatase dimerization domain-containing protein | - |
| OXV10_RS13495 | 2726075..2726353 | + | 279 | WP_001575998.1 | excisionase | - |
| OXV10_RS13500 | 2726328..2727407 | + | 1080 | WP_000087636.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2727545..2727690 | + | 146 | - | - | Antitoxin |
| - | 2727547..2727650 | - | 104 | - | - | Toxin |
| OXV10_RS13505 | 2727790..2728143 | - | 354 | WP_000722370.1 | YebY family protein | - |
| OXV10_RS13510 | 2728160..2729035 | - | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| OXV10_RS13515 | 2729036..2729410 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| OXV10_RS13520 | 2729548..2729778 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| OXV10_RS13525 | 2729886..2730542 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| OXV10_RS13530 | 2730566..2731264 | + | 699 | WP_000944288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 / sodCI | 2691517..2733352 | 41835 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T265993 NZ_CP113540:c2727650-2727547 [Salmonella enterica]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT265993 NZ_CP113540:2727545-2727690 [Salmonella enterica]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
